From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 28 Oct 2011 16:23:22 +0000 (+0100)
Subject: JAL-885 - catch race condition when rna structure width is different to alignment... 
X-Git-Tag: Jalview_2_9~565^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f51ad53a1437086e6deea02e4f8930078b92bfcc;p=jalview.git

JAL-885 - catch race condition when rna structure width is different to alignment annotation width (may be a finesse here)
---

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 47e2cb7..0d7d4ca 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -177,7 +177,7 @@ public class AnnotationRenderer
         // to
         // be stored
         if (aa.groupRef == null && aa.sequenceRef == null
-                && av_renderProfile)
+                && av_renderProfile && hStrucConsensus!=null && hStrucConsensus.length>column)
         {
           return StructureFrequency.extractProfile(hStrucConsensus[column],
                   av_ignoreGapsConsensus);