From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 11 Sep 2007 16:55:03 +0000 (+0000)
Subject: refactored initialisation of new session with existing document code.
X-Git-Tag: Release_0.2~62
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f5d362ecabee4658cebb7ad43b42381950c74a82;p=vamsas.git

refactored initialisation of new session with existing document code.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@458 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java b/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java
index a2b999d..d5dc880 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java
@@ -103,6 +103,15 @@ public class SimpleClient implements IClient {
    */
   protected SimpleClient(UserHandle user, ClientHandle client, VamsasSession sess, File importingArchive) throws Exception {
     this(user, client, sess);
+    if (log.isDebugEnabled())
+    {
+      log.debug("Attempting to create a new session from file: "+importingArchive);
+    }
+    initSessionDocFromFile(importingArchive);
+    // TODO: write provenance entry for new session indicating the import.
+  }
+  
+  private void initSessionDocFromFile(File importingArchive) throws Exception {
     VamsasArchive sessdoc = _session.getVamsasDocument();
     try {
       VamsasArchiveReader odoc = new VamsasArchiveReader(importingArchive);
@@ -111,15 +120,16 @@ public class SimpleClient implements IClient {
       sessdoc.putVamsasDocument(doc, sdoc.vorba);
       sessdoc.closeArchive();
       log.debug("Imported new vamsas data from "+importingArchive);
+      
     } catch (Exception e) {
       sessdoc.cancelArchive();
-      // write a dummy iohandler
+      // TODO: check that new session is really writeable if the imported document was invalid ? or is removed
       _session.slog.info("Exception when importing document data from "+importingArchive);
       log.warn("While importing session data from existing archive in "+importingArchive, e);      
       throw new Exception("Failed to import data from "+importingArchive, e);
     }
   }
-  
+
   /*
    * (non-Javadoc)
    * LATER: check that build substitution variables are correct