From: kiramt Date: Tue, 5 Sep 2017 13:04:17 +0000 (+0100) Subject: JAL-2722 Reinstate allGroups value setting in getResidueColour X-Git-Tag: Release_2_10_3b1~137^2~1 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f879178793c14038180e56ddddbc1812fb9473ec;p=jalview.git JAL-2722 Reinstate allGroups value setting in getResidueColour --- diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java index 5be7f55..0a1e8ef 100755 --- a/src/jalview/gui/SequenceRenderer.java +++ b/src/jalview/gui/SequenceRenderer.java @@ -95,6 +95,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer public Color getResidueColour(final SequenceI seq, int position, FeatureColourFinder finder) { + allGroups = av.getAlignment().findAllGroups(seq); return resColourFinder.getResidueColour(av.getShowBoxes(), av.getResidueShading(), allGroups, seq, position,