From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 23 Jun 2016 13:02:38 +0000 (+0100)
Subject: JAL-2110 use SequenceI.isProtein()
X-Git-Tag: Release_2_10_0~140^2~5^2~46
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f895c499fd7ac7e02a3da2bdf6060fbd344205c0;p=jalview.git

JAL-2110 use SequenceI.isProtein()
---

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index d96ab58..3862edf 100644
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -779,8 +779,7 @@ public class CrossRef
            * complementary type if !direct
            */
           {
-            boolean isDna = Comparison
-                    .isNucleotide(new SequenceI[] { nxt });
+            boolean isDna = !nxt.isProtein();
             if (direct ? (isDna != fromDna) : (isDna == fromDna))
             {
               // skip this sequence because it is wrong molecule type