From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 27 Oct 2015 12:17:25 +0000 (+0000)
Subject: JAL-666 patch JAL-1947 in applet where overview is under sampled when lost of sequenc... 
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f9e504a0107cdce5d648b3ea8eb880724b8a84f9;p=jalview.git

JAL-666 patch JAL-1947 in applet where overview is under sampled when lost of sequences are hidden in the viewport (hangover from applet not supporting hidden rows)
---

diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index 9ec6385..88a1617 100755
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -268,7 +268,8 @@ public class OverviewPanel extends Panel implements Runnable,
   {
     miniMe = null;
     int alwidth = av.getAlignment().getWidth();
-    int alheight = av.getAlignment().getHeight();
+    int alheight = av.getAlignment().getHeight()
+            + av.getAlignment().getHiddenSequences().getSize();
 
     if (av.isShowSequenceFeatures())
     {