From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 27 Jul 2006 15:58:56 +0000 (+0000)
Subject: Sends gapChar to seqData
X-Git-Tag: Release_2_1~177
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=fb4c54617dd9c5ac605853551478596902f34541;p=jalview.git

Sends gapChar to seqData
---

diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java
index 98916e3..974175f 100755
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -1018,13 +1018,13 @@ public class NJTree
      *
      * @return null or cut'n'pasteable alignment
      */
-    public String printOriginalSequenceData()
+    public String printOriginalSequenceData(char gapChar)
     {
       if (seqData==null)
         return null;
-//      return seqData.getSequenceString(Comparison.GapChars[0]);
+
       StringBuffer sb = new StringBuffer();
-      String[] seqdatas = seqData.getSequenceStrings(Comparison.GapChars.charAt(0));
+      String[] seqdatas = seqData.getSequenceStrings(gapChar);
       for(int i=0; i<seqdatas.length; i++)
       {
         sb.append(new jalview.util.Format("%-" + 15 + "s").form(