From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Mon, 14 May 2012 21:29:38 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=fd4ebf6cb139b472664fee8cb9e74af3933a4ae5;p=jalview.git

in progress
---

diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
index e71eeef..41b7ce4 100644
--- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
+++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
@@ -537,7 +537,7 @@ public final class AptxUtil {
         }
     }
 
-    final static String crateBasicInformation( final Phylogeny phy ) {
+    final static String createBasicInformation( final Phylogeny phy ) {
         final StringBuilder desc = new StringBuilder();
         if ( ( phy != null ) && !phy.isEmpty() ) {
             if ( !ForesterUtil.isEmpty( phy.getName() ) ) {
@@ -617,8 +617,14 @@ public final class AptxUtil {
                 desc.append( "    Maximum: " + ForesterUtil.roundToInt( ds.getMax() ) );
                 desc.append( "\n" );
             }
-            final List<DescriptiveStatistics> css = PhylogenyMethods.calculatConfidenceStatistics( phy );
-            if ( css.size() > 0 ) {
+            List<DescriptiveStatistics> css = null;
+            try {
+                css = PhylogenyMethods.calculatConfidenceStatistics( phy );
+            }
+            catch ( final IllegalArgumentException e ) {
+                ForesterUtil.printWarningMessage( Constants.PRG_NAME, e.getMessage() );
+            }
+            if ( ( css != null ) && ( css.size() > 0 ) ) {
                 desc.append( "\n" );
                 for( int i = 0; i < css.size(); ++i ) {
                     final DescriptiveStatistics cs = css.get( i );
diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrame.java b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
index 6b4c096..5af1879 100644
--- a/forester/java/src/org/forester/archaeopteryx/MainFrame.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
@@ -1056,7 +1056,7 @@ public abstract class MainFrame extends JFrame implements ActionListener {
         if ( ( _mainpanel.getCurrentPhylogeny() == null ) || _mainpanel.getCurrentPhylogeny().isEmpty() ) {
             return;
         }
-        _textframe = TextFrame.instantiate( AptxUtil.crateBasicInformation( _mainpanel.getCurrentPhylogeny() ) );
+        _textframe = TextFrame.instantiate( AptxUtil.createBasicInformation( _mainpanel.getCurrentPhylogeny() ) );
     }
 
     void viewAsNexus() {