From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 29 Sep 2020 15:41:39 +0000 (+0100)
Subject: JAL-3760 fix tests for changed behaviour
X-Git-Tag: Release_2_11_1_3~7^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Fbug%2FJAL-3760_protsTreatedAsNucleotides;p=jalview.git

JAL-3760 fix tests for changed behaviour
---

diff --git a/test/jalview/util/ComparisonTest.java b/test/jalview/util/ComparisonTest.java
index 6f6841d..2e646f5 100644
--- a/test/jalview/util/ComparisonTest.java
+++ b/test/jalview/util/ComparisonTest.java
@@ -85,15 +85,15 @@ public class ComparisonTest
     seq = new Sequence("DNA", "ACTugGCCAG");
     SequenceI seq2 = new Sequence("Protein", "FLIMVSPTYW");
     /*
-     * 90% DNA:
+     * 90% DNA but one protein sequence - expect false
      */
-    assertTrue(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
+    assertFalse(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
         seq, seq, seq, seq, seq, seq, seq2 }));
-    assertTrue(Comparison.isNucleotide(new SequenceI[][] {
+    assertFalse(Comparison.isNucleotide(new SequenceI[][] {
         new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
         new SequenceI[] { seq, seq, seq, seq, seq, seq2 } }));
     /*
-     * 80% DNA:
+     * 80% DNA but one protein sequence - Expect false
      */
     assertFalse(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
         seq, seq, seq, seq, seq, seq2, seq2 }));