From: Mateusz Warowny <mmzwarowny@dundee.ac.uk>
Date: Fri, 2 Jun 2023 13:08:42 +0000 (+0200)
Subject: JAL-3954 Do not retrieve alignment for failed jobs
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Ffeature%2FJAL-3954-ebi-phmmer;p=jalview.git

JAL-3954 Do not retrieve alignment for failed jobs
---

diff --git a/src/jalview/ws2/actions/hmmer/PhmmerTask.java b/src/jalview/ws2/actions/hmmer/PhmmerTask.java
index e077b61..8a7a826 100644
--- a/src/jalview/ws2/actions/hmmer/PhmmerTask.java
+++ b/src/jalview/ws2/actions/hmmer/PhmmerTask.java
@@ -61,8 +61,11 @@ class PhmmerTask extends AbstractPollableTask<BaseJob, AlignmentI>
   protected AlignmentI done() throws IOException
   {
     var job = getSubJobs().get(0);
+    var status = job.getStatus();
     Console.info(String.format("phmmer finished job \"%s\" with status %s",
-            job.getServerJob().getJobId(), job.getStatus()));
+            job.getServerJob().getJobId(), status));
+    if (status != JobStatus.COMPLETED)
+      return null;
     var outputAlignment = client.getAlignment(job.getServerJob());
     var querySeq = job.getInputSequences().get(0).deriveSequence();
     {