From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 3 May 2017 11:15:34 +0000 (+0100)
Subject: JAL-1933 JAL-2501 i18n for all auto calculated descriptions
X-Git-Tag: Release_2_10_2~3^2~109^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Ffeatures%2FJAL-2432_annotbypercent;p=jalview.git

JAL-1933 JAL-2501 i18n for all auto calculated descriptions
---

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index f28752b..922f482 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -1299,3 +1299,9 @@ warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot
 label.invalid_name = Invalid Name !
 label.output_seq_details = Output Sequence Details to list all database references
 label.urllinks = Links
+label.quality_descr = Alignment Quality based on Blosum62 scores
+label.conservation_descr = Conservation of total alignment less than {0}% gaps
+label.consensus_descr = PID
+label.complement_consensus_descr = PID for cDNA
+label.strucconsensus_descr = PID for base pairs
+label.occupancy_descr = Number of aligned positions 
\ No newline at end of file
diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 0015299..fa3a8a7 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -62,6 +62,7 @@ import jalview.structure.VamsasSource;
 import jalview.util.Comparison;
 import jalview.util.MapList;
 import jalview.util.MappingUtils;
+import jalview.util.MessageManager;
 import jalview.viewmodel.styles.ViewStyle;
 import jalview.workers.AlignCalcManager;
 import jalview.workers.ComplementConsensusThread;
@@ -1892,7 +1893,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
       {
         initRNAStructure();
       }
-      consensus = new AlignmentAnnotation("Consensus", "PID",
+      consensus = new AlignmentAnnotation("Consensus",
+              MessageManager.getString("label.consensus_descr"),
               new Annotation[1], 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
       initConsensus(consensus);
       initGapCounts();
@@ -1929,7 +1931,9 @@ public abstract class AlignmentViewport implements AlignViewportI,
         if (doConsensus)
         {
           complementConsensus = new AlignmentAnnotation("cDNA Consensus",
-                  "PID for cDNA", new Annotation[1], 0f, 100f,
+                  MessageManager
+                          .getString("label.complement_consensus_descr"),
+                  new Annotation[1], 0f, 100f,
                   AlignmentAnnotation.BAR_GRAPH);
           initConsensus(complementConsensus);
           return true;
@@ -1957,7 +1961,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
     if (showOccupancy)
     {
       gapcounts = new AlignmentAnnotation("Occupancy",
-              "Number of aligned positions", new Annotation[1], 0f,
+              MessageManager.getString("label.occupancy_descr"),
+              new Annotation[1], 0f,
               alignment.getHeight(), AlignmentAnnotation.BAR_GRAPH);
       gapcounts.hasText = true;
       gapcounts.autoCalculated = true;
@@ -1975,8 +1980,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
       if (conservation == null)
       {
         conservation = new AlignmentAnnotation("Conservation",
-                "Conservation of total alignment less than "
-                        + getConsPercGaps() + "% gaps", new Annotation[1],
+                MessageManager.formatMessage("label.conservation_descr",
+                        getConsPercGaps()), new Annotation[1],
                 0f, 11f, AlignmentAnnotation.BAR_GRAPH);
         conservation.hasText = true;
         conservation.autoCalculated = true;
@@ -1992,7 +1997,7 @@ public abstract class AlignmentViewport implements AlignViewportI,
       if (quality == null)
       {
         quality = new AlignmentAnnotation("Quality",
-                "Alignment Quality based on Blosum62 scores",
+                MessageManager.getString("label.quality_descr"),
                 new Annotation[1], 0f, 11f, AlignmentAnnotation.BAR_GRAPH);
         quality.hasText = true;
         quality.autoCalculated = true;
@@ -2005,7 +2010,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
   {
     if (alignment.hasRNAStructure() && strucConsensus == null)
     {
-      strucConsensus = new AlignmentAnnotation("StrucConsensus", "PID",
+      strucConsensus = new AlignmentAnnotation("StrucConsensus",
+              MessageManager.getString("label.strucconsensus_descr"),
               new Annotation[1], 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
       strucConsensus.hasText = true;
       strucConsensus.autoCalculated = true;