From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 23 May 2017 19:39:17 +0000 (+0100)
Subject: JAL-2549 RNAAliFold result to annotation file roundtrip test fails test due to JAL... 
X-Git-Tag: Release_2_10_2~3^2~70^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Ffeatures%2FJAL-2549_updateJABAWSto220;hp=cce9a433443d6407b561679c4c489cdbfca2d12e;p=jalview.git

JAL-2549 RNAAliFold result to annotation file roundtrip test fails test due to JAL-2550 - Upper/lower case alphabet recognised as WUSS RNA annotation
---

diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java
index 5ea97ff..089c29f 100644
--- a/test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/test/jalview/ws/jabaws/RNAStructExportImport.java
@@ -202,7 +202,9 @@ public class RNAStructExportImport
     } while (af.getViewport().getCalcManager().isWorking());
 
     AlignmentI orig_alig = af.getViewport().getAlignment();
-
+    // JBPNote: this assert fails (2.10.2) because the 'Reference Positions'
+    // annotation is mistakenly recognised as an RNA annotation row when read in
+    // as an annotation file.
     verifyAnnotationFileIO("Testing RNAalifold Annotation IO", orig_alig);
 
   }