From: Sasha Sherstnev Date: Fri, 15 Nov 2013 11:40:50 +0000 (+0000) Subject: PROT-1 Rename website directory into webapp (standard maven dir name) X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Fmvn-built-version;p=proteocache.git PROT-1 Rename website directory into webapp (standard maven dir name) --- diff --git a/src/main/website/AllReports.jsp b/src/main/weapp/AllReports.jsp similarity index 100% rename from src/main/website/AllReports.jsp rename to src/main/weapp/AllReports.jsp diff --git a/src/main/website/Index.jsp b/src/main/weapp/Index.jsp similarity index 100% rename from src/main/website/Index.jsp rename to src/main/weapp/Index.jsp diff --git a/src/main/website/PrintResult.jsp b/src/main/weapp/PrintResult.jsp similarity index 100% rename from src/main/website/PrintResult.jsp rename to src/main/weapp/PrintResult.jsp diff --git a/src/main/website/QueryJobsByDate.jsp b/src/main/weapp/QueryJobsByDate.jsp similarity index 100% rename from src/main/website/QueryJobsByDate.jsp rename to src/main/weapp/QueryJobsByDate.jsp diff --git a/src/main/website/QueryLogInfo.jsp b/src/main/weapp/QueryLogInfo.jsp similarity index 100% rename from src/main/website/QueryLogInfo.jsp rename to src/main/weapp/QueryLogInfo.jsp diff --git a/src/main/website/QuerySequenceProtein.jsp b/src/main/weapp/QuerySequenceProtein.jsp similarity index 100% rename from src/main/website/QuerySequenceProtein.jsp rename to src/main/weapp/QuerySequenceProtein.jsp diff --git a/src/main/website/QueryTimeExecition.jsp b/src/main/weapp/QueryTimeExecition.jsp similarity index 100% rename from src/main/website/QueryTimeExecition.jsp rename to src/main/weapp/QueryTimeExecition.jsp diff --git a/src/main/website/ReportJobsByDate.jsp b/src/main/weapp/ReportJobsByDate.jsp similarity index 100% rename from src/main/website/ReportJobsByDate.jsp rename to src/main/weapp/ReportJobsByDate.jsp diff --git a/src/main/website/ReportLogInfo.jsp b/src/main/weapp/ReportLogInfo.jsp similarity index 100% rename from src/main/website/ReportLogInfo.jsp rename to src/main/weapp/ReportLogInfo.jsp diff --git a/src/main/website/ReportSequenceProtein.jsp b/src/main/weapp/ReportSequenceProtein.jsp similarity index 100% rename from src/main/website/ReportSequenceProtein.jsp rename to src/main/weapp/ReportSequenceProtein.jsp diff --git a/src/main/website/ReportTimeExecution.jsp b/src/main/weapp/ReportTimeExecution.jsp similarity index 100% rename from src/main/website/ReportTimeExecution.jsp rename to src/main/weapp/ReportTimeExecution.jsp diff --git a/src/main/website/StatisticsProtein.jsp b/src/main/weapp/StatisticsProtein.jsp similarity index 100% rename from src/main/website/StatisticsProtein.jsp rename to src/main/weapp/StatisticsProtein.jsp diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraReader.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraReader.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraReader.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraReader.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraWriter.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraWriter.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraWriter.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraWriter.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/DataBase.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/DataBase.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/DataBase.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/DataBase.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader$1.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader$1.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader$1.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader$1.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/FastaSequence.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaSequence.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/FastaSequence.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaSequence.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/JpredParser.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParser.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/JpredParser.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParser.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/Pair.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/Pair.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/Pair.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/Pair.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/StructureJobLog.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureJobLog.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/StructureJobLog.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureJobLog.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class diff --git a/src/main/website/WEB-INF/classes/compbio/engine/Job.class b/src/main/weapp/WEB-INF/classes/compbio/engine/Job.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/engine/Job.class rename to src/main/weapp/WEB-INF/classes/compbio/engine/Job.class diff --git a/src/main/website/WEB-INF/classes/compbio/engine/JpredJob.class b/src/main/weapp/WEB-INF/classes/compbio/engine/JpredJob.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/engine/JpredJob.class rename to src/main/weapp/WEB-INF/classes/compbio/engine/JpredJob.class diff --git a/src/main/website/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class b/src/main/weapp/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class rename to src/main/weapp/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class diff --git a/src/main/website/WEB-INF/classes/compbio/engine/archive/Archive.class b/src/main/weapp/WEB-INF/classes/compbio/engine/archive/Archive.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/engine/archive/Archive.class rename to src/main/weapp/WEB-INF/classes/compbio/engine/archive/Archive.class diff --git a/src/main/website/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class b/src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class rename to src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class diff --git a/src/main/website/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class b/src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class rename to src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$1.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$1.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$1.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$1.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$2.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$2.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$2.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$2.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$3.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$3.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$3.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$3.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/DetailList.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/DetailList.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/DetailList.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/DetailList.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletLogInfo.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletLogInfo.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletLogInfo.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletLogInfo.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class diff --git a/src/main/website/WEB-INF/classes/compbio/statistic/CassandraRequester.class b/src/main/weapp/WEB-INF/classes/compbio/statistic/CassandraRequester.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/statistic/CassandraRequester.class rename to src/main/weapp/WEB-INF/classes/compbio/statistic/CassandraRequester.class diff --git a/src/main/website/WEB-INF/classes/compbio/statistic/StatisticsProt.class b/src/main/weapp/WEB-INF/classes/compbio/statistic/StatisticsProt.class similarity index 100% rename from src/main/website/WEB-INF/classes/compbio/statistic/StatisticsProt.class rename to src/main/weapp/WEB-INF/classes/compbio/statistic/StatisticsProt.class diff --git a/src/main/website/WEB-INF/classes/lib/testng-5.10-jdk15.jar b/src/main/weapp/WEB-INF/classes/lib/testng-5.10-jdk15.jar similarity index 100% rename from src/main/website/WEB-INF/classes/lib/testng-5.10-jdk15.jar rename to src/main/weapp/WEB-INF/classes/lib/testng-5.10-jdk15.jar diff --git a/src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar b/src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar similarity index 100% rename from src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar rename to src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar diff --git a/src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar b/src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar similarity index 100% rename from src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar rename to src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar diff --git a/src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar b/src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar similarity index 100% rename from src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar rename to src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar diff --git a/src/main/website/WEB-INF/lib/displaytag-1.2.jar b/src/main/weapp/WEB-INF/lib/displaytag-1.2.jar similarity index 100% rename from src/main/website/WEB-INF/lib/displaytag-1.2.jar rename to src/main/weapp/WEB-INF/lib/displaytag-1.2.jar diff --git a/src/main/website/WEB-INF/lib/guava-15.0.jar b/src/main/weapp/WEB-INF/lib/guava-15.0.jar similarity index 100% rename from src/main/website/WEB-INF/lib/guava-15.0.jar rename to src/main/weapp/WEB-INF/lib/guava-15.0.jar diff --git a/src/main/website/WEB-INF/lib/jabaws-core-2.1.0.jar b/src/main/weapp/WEB-INF/lib/jabaws-core-2.1.0.jar similarity index 100% rename from src/main/website/WEB-INF/lib/jabaws-core-2.1.0.jar rename to src/main/weapp/WEB-INF/lib/jabaws-core-2.1.0.jar diff --git a/src/main/website/WEB-INF/lib/jabaws-core-src-2.1.0.jar b/src/main/weapp/WEB-INF/lib/jabaws-core-src-2.1.0.jar similarity index 100% rename from src/main/website/WEB-INF/lib/jabaws-core-src-2.1.0.jar rename to src/main/weapp/WEB-INF/lib/jabaws-core-src-2.1.0.jar diff --git a/src/main/website/WEB-INF/lib/jackson-core-asl-1.9.13.jar b/src/main/weapp/WEB-INF/lib/jackson-core-asl-1.9.13.jar similarity index 100% rename from src/main/website/WEB-INF/lib/jackson-core-asl-1.9.13.jar rename to src/main/weapp/WEB-INF/lib/jackson-core-asl-1.9.13.jar diff --git a/src/main/website/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar b/src/main/weapp/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar similarity index 100% rename from src/main/website/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar rename to src/main/weapp/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar diff --git a/src/main/website/WEB-INF/lib/jstl-1.2.jar b/src/main/weapp/WEB-INF/lib/jstl-1.2.jar similarity index 100% rename from src/main/website/WEB-INF/lib/jstl-1.2.jar rename to src/main/weapp/WEB-INF/lib/jstl-1.2.jar diff --git a/src/main/website/WEB-INF/lib/log4j-1.2.16.jar b/src/main/weapp/WEB-INF/lib/log4j-1.2.16.jar similarity index 100% rename from src/main/website/WEB-INF/lib/log4j-1.2.16.jar rename to src/main/weapp/WEB-INF/lib/log4j-1.2.16.jar diff --git a/src/main/website/WEB-INF/lib/lz4-1.2.0.jar b/src/main/weapp/WEB-INF/lib/lz4-1.2.0.jar similarity index 100% rename from src/main/website/WEB-INF/lib/lz4-1.2.0.jar rename to src/main/weapp/WEB-INF/lib/lz4-1.2.0.jar diff --git a/src/main/website/WEB-INF/lib/metrics-core-3.0.1.jar b/src/main/weapp/WEB-INF/lib/metrics-core-3.0.1.jar similarity index 100% rename from src/main/website/WEB-INF/lib/metrics-core-3.0.1.jar rename to src/main/weapp/WEB-INF/lib/metrics-core-3.0.1.jar diff --git a/src/main/website/WEB-INF/lib/netty-3.6.6.Final.jar b/src/main/weapp/WEB-INF/lib/netty-3.6.6.Final.jar similarity index 100% rename from src/main/website/WEB-INF/lib/netty-3.6.6.Final.jar rename to src/main/weapp/WEB-INF/lib/netty-3.6.6.Final.jar diff --git a/src/main/website/WEB-INF/lib/slf4j-api-1.7.5.jar b/src/main/weapp/WEB-INF/lib/slf4j-api-1.7.5.jar similarity index 100% rename from src/main/website/WEB-INF/lib/slf4j-api-1.7.5.jar rename to src/main/weapp/WEB-INF/lib/slf4j-api-1.7.5.jar diff --git a/src/main/website/WEB-INF/lib/slf4j-simple-1.7.5.jar b/src/main/weapp/WEB-INF/lib/slf4j-simple-1.7.5.jar similarity index 100% rename from src/main/website/WEB-INF/lib/slf4j-simple-1.7.5.jar rename to src/main/weapp/WEB-INF/lib/slf4j-simple-1.7.5.jar diff --git a/src/main/website/WEB-INF/lib/snappy-java-1.1.0.jar b/src/main/weapp/WEB-INF/lib/snappy-java-1.1.0.jar similarity index 100% rename from src/main/website/WEB-INF/lib/snappy-java-1.1.0.jar rename to src/main/weapp/WEB-INF/lib/snappy-java-1.1.0.jar diff --git a/src/main/website/WEB-INF/web.xml b/src/main/weapp/WEB-INF/web.xml similarity index 100% rename from src/main/website/WEB-INF/web.xml rename to src/main/weapp/WEB-INF/web.xml diff --git a/src/main/website/conf/Engine.properties b/src/main/weapp/conf/Engine.properties similarity index 100% rename from src/main/website/conf/Engine.properties rename to src/main/weapp/conf/Engine.properties diff --git a/src/main/website/conf/GA.properties b/src/main/weapp/conf/GA.properties similarity index 100% rename from src/main/website/conf/GA.properties rename to src/main/weapp/conf/GA.properties diff --git a/src/main/website/conf/Proteocache.properties b/src/main/weapp/conf/Proteocache.properties similarity index 100% rename from src/main/website/conf/Proteocache.properties rename to src/main/weapp/conf/Proteocache.properties