From: Jim Procter <j.procter@dundee.ac.uk>
Date: Fri, 14 Oct 2022 15:35:34 +0000 (+0100)
Subject: JAL-4079 avoid calling Alignment.getWidth() for each pass of a loop
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Fpatch%2FJAL-4079_scalability_bottlenecks;p=jalview.git

JAL-4079 avoid calling Alignment.getWidth() for each pass of a loop
---

diff --git a/src/jalview/structures/models/AAStructureBindingModel.java b/src/jalview/structures/models/AAStructureBindingModel.java
index 906cb59..6ce896c 100644
--- a/src/jalview/structures/models/AAStructureBindingModel.java
+++ b/src/jalview/structures/models/AAStructureBindingModel.java
@@ -700,7 +700,7 @@ public abstract class AAStructureBindingModel
             {
               refStructure = pdbfnum;
             }
-            for (int r = 0; r < alignment.getWidth(); r++)
+            for (int r = 0, wid = alignment.getWidth(); r < wid; r++)
             {
               if (!matched.get(r))
               {