From: Jim Procter <jprocter@issues.jalview.org>
Date: Sat, 27 May 2017 13:01:41 +0000 (+0100)
Subject: JAL-2563 failing test to verify SetStatus returns position and message includes the... 
X-Git-Tag: Release_2_10_2~3^2~66^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=refs%2Fheads%2Ftask%2FJAL-2562_SequenceI.findPosition;p=jalview.git

JAL-2563 failing test to verify SetStatus returns position and message includes the position for ambiguous peptide ‘B’.
---

diff --git a/test/jalview/gui/SeqPanelTest.java b/test/jalview/gui/SeqPanelTest.java
index 210dcf3..53dff0e 100644
--- a/test/jalview/gui/SeqPanelTest.java
+++ b/test/jalview/gui/SeqPanelTest.java
@@ -21,6 +21,7 @@
 package jalview.gui;
 
 import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertTrue;
 
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
@@ -65,4 +66,21 @@ public class SeqPanelTest
             alignFrame.alignPanel.getSeqPanel().setStatusMessage(
                     visAl.getSequenceAt(1), 3, 1), -1);
   }
+
+  @Test(groups = "Functional")
+  public void testAmbiguousAminoAcidGetsStatusMessage()
+  {
+    SequenceI seq1 = new Sequence("Seq1", "ABCDE");
+    SequenceI seq2 = new Sequence("Seq2", "AB--E");
+    AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+    AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
+            al.getHeight());
+    AlignmentI visAl = alignFrame.getViewport().getAlignment();
+    // Test either side of gap
+    // This first assert fails due to JAL-2563
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 1, 1), 2);
+    assertTrue(alignFrame.statusBar.getText().contains("(2)"));
+  }
 }