2017-04-11 |
Fábio Madeira | JWS-114 Fixed the paths to the cluster executables. |
tree | commitdiff |
2017-03-08 |
Fábio Madeira | Reverting to the absolute paths that actually exist... |
tree | commitdiff |
2017-03-08 |
Fábio Madeira | Updated configs for testing local/cluster mode in the... |
tree | commitdiff |
2017-02-08 |
Fábio Madeira | JWS-114 Commented out ‘cluster’ entries for consistency... |
tree | commitdiff |
2017-02-08 |
Fábio Madeira | JWS-114 Added a missing section to Executable.propertie... |
tree | commitdiff |
2017-02-08 |
Fábio Madeira | JWS-113 Commented Jpred entries in various configuratio... |
tree | commitdiff |
2013-10-14 |
Sasha Sherstnev | Re-design jpred.pl input options: no -seq for a file... |
tree | commitdiff |
2013-10-14 |
Sasha Sherstnev | Define path to UNIREF database in conf/Executable.prope... |
tree | commitdiff |
2013-10-04 |
Jim Procter | JWS-68 parameters cannot take multiple option names... |
tree | commitdiff |
2013-09-30 |
Sasha Sherstnev | Swtich off GA by default |
tree | commitdiff |
2013-09-24 |
Sasha Sherstnev | Add all needed infrastructure for MSAprobs and GLprobs |
tree | commitdiff |
2013-09-13 |
Sasha Sherstnev | New set of presets for Jpred |
tree | commitdiff |
2013-09-13 |
Sasha Sherstnev | New Jpred parameters and new set of Jpred presets |
tree | commitdiff |
2013-09-09 |
Sasha Sherstnev | Add lost description of RNAalifold from ViennaRNA |
tree | commitdiff |
2013-09-06 |
Sasha Sherstnev | Merge branch 'JABAWS_Release_2_5' into develop |
tree | commitdiff |
2013-08-31 |
Daniel Barton | merged conf/Executable.properties |
tree | commitdiff |
2013-08-31 |
Daniel Barton | Parameter bug fixed, Jalview will now run some parameters |
tree | commitdiff |
2013-08-30 |
Jim Procter | JWS-71 - nominal Limits for RNAFold service - necessary... |
tree | commitdiff |
2013-08-30 |
Daniel Barton | Clean-up, refactoring, commenting. Parameters file... |
tree | commitdiff |
2013-08-29 |
Daniel Luke Barton | Merge branch 'RNAalifold' of https://source.jalview... |
tree | commitdiff |
2013-08-29 |
Daniel Luke Barton | conf/Executable.properties and compilebin.sh updated... |
tree | commitdiff |
2013-08-28 |
Daniel Barton | Category.java updated to include new category for RNA... |
tree | commitdiff |
2013-08-12 |
Daniel Barton | Webservice which implements FoldWS and returns String... |
tree | commitdiff |
2013-08-08 |
Sasha Sherstnev | uncomment limit files in order to make some tests succe... |
tree | commitdiff |
2013-08-08 |
Daniel Barton | Webservice works! but only supports some parameters... |
tree | commitdiff |
2013-08-07 |
Sasha Sherstnev | Describe new parameters of Jpred |
tree | commitdiff |
2013-08-03 |
Daniel Barton | Basic Testing Setup, no getResults method yet |
tree | commitdiff |
2013-08-02 |
Sasha Sherstnev | Re-format configuration files |
tree | commitdiff |
2013-08-02 |
Sasha Sherstnev | Re-format the config files in order to get more readabl... |
tree | commitdiff |
2013-08-02 |
Sasha Sherstnev | JWS-67 configuration and manual file for jpred 3.0.1 |
tree | commitdiff |
2013-08-01 |
Sasha Sherstnev | JWS-67 Add Jpred to configuration files |
tree | commitdiff |
2013-08-01 |
Daniel Barton | RNAalifold.java runner and RNAalifoldTester incomplete |
tree | commitdiff |
2013-07-29 |
Sasha Sherstnev | merge JABAWS_Release_2_1 into develop |
tree | commitdiff |
2013-07-29 |
Sasha | re-configure log4j location in order to allow log4j... |
tree | commitdiff |
2013-07-26 |
Sasha | Improve building process: log4j.properties is in a... |
tree | commitdiff |
2013-06-28 |
Sasha | JWS-50 refactored the valid AACon method parameters... |
tree | commitdiff |
2013-06-19 |
Jim Procter | Workaround for JWS-61 that resolves JAL-1127 |
tree | commitdiff |
2013-06-18 |
Jim Procter | JWS-50 refactored the valid AACon method parameters... |
tree | commitdiff |
2013-06-17 |
Sasha | Make configuration file clearer and add new parameters... |
tree | commitdiff |
2013-06-17 |
Jim Procter | JWS-50 refactored the valid AACon method parameters... |
tree | commitdiff |
2013-04-26 |
Sasha | Delete old job directory automatically |
tree | commitdiff |
2013-04-24 |
Sasha | debug version of /log4j.properties |
tree | commitdiff |
2013-03-29 |
Alexander Sherstnev | Website files updated for JABAWS 3.0a |
tree | commitdiff |
2012-06-04 |
jprocter | Merge branch 'JWS-27-jronn' into JABAWS_Release_2_0 origin/JABAWS_Release_2_0 |
tree | commitdiff |
2012-06-04 |
jprocter | JWS-27 replaced JRonn with patched biojava 3.0.4 versio... |
tree | commitdiff |
2012-05-15 |
jprocter | remove jabaws 3 development code |
tree | commitdiff |
2011-10-11 |
pvtroshin | Google Analytics statistics is added |
tree | commitdiff |
2011-10-11 |
pvtroshin | ga config file |
tree | commitdiff |
2011-08-16 |
pvtroshin | Minor changes |
tree | commitdiff |
2011-08-04 |
pvtroshin | Get rid of v_hmem settings |
tree | commitdiff |
2011-08-04 |
pvtroshin | reverting cluster engine settings (disabled by default) |
tree | commitdiff |
2011-08-04 |
pvtroshin | ClustalO settings |
tree | commitdiff |
2011-08-03 |
pvtroshin | Wrapper for Clustal Omega. |
tree | commitdiff |
2011-07-06 |
pvtroshin | formatting change |
tree | commitdiff |
2011-07-06 |
pvtroshin | Pre release Executable.properties, help added, unused... |
tree | commitdiff |
2011-07-06 |
pvtroshin | Better method for searching JAVA |
tree | commitdiff |
2011-06-30 |
pvtroshin | obtain JAVA executable path from the JAVA_HOME variable... |
tree | commitdiff |
2011-06-28 |
pvtroshin | Stat collector updates to work with JABA 2 input &... |
tree | commitdiff |
2011-06-28 |
pvtroshin | Clean database & small changes |
tree | commitdiff |
2011-06-27 |
pvtroshin | Minor tweaks |
tree | commitdiff |
2011-06-27 |
pvtroshin | Generalizing configuration prior to release. |
tree | commitdiff |
2011-06-23 |
pvtroshin | update to compbio.utils and a few small changes |
tree | commitdiff |
2011-06-23 |
pvtroshin | modification to enable globplot run on nanna (PYTHONPAT... |
tree | commitdiff |
2011-06-22 |
pvtroshin | Fix for testcases |
tree | commitdiff |
2011-06-21 |
pvtroshin | Revert multithreading support for mafft as it does... |
tree | commitdiff |
2011-06-21 |
pvtroshin | Get rind of NativeClusterJob interface as pretty much... |
tree | commitdiff |
2011-06-21 |
pvtroshin | mafft new location |
tree | commitdiff |
2011-06-20 |
pvtroshin | new version of muscle 3.8.31 |
tree | commitdiff |
2011-06-17 |
pvtroshin | Refactoring of all SequenceAnnotation web services |
tree | commitdiff |
2011-06-16 |
pvtroshin | Binaries relocation |
tree | commitdiff |
2011-06-16 |
pvtroshin | IUPred final touches. All test cases pass |
tree | commitdiff |
2011-06-14 |
pvtroshin | Adding XML executable description for IUPred |
tree | commitdiff |
2011-06-14 |
pvtroshin | IUPred result readers. IUpred binaries compilation... |
tree | commitdiff |
2011-06-06 |
pvtroshin | Adding registry web service and changes to WStester... |
tree | commitdiff |
2011-06-03 |
pvtroshin | exclude cancelled jobs from incomplete |
tree | commitdiff |
2011-05-31 |
pvtroshin | A bug fix, help text for stat jsp pages and style impro... |
tree | commitdiff |
2011-05-30 |
pvtroshin | New properties to work with work directories |
tree | commitdiff |
2011-05-27 |
pvtroshin | new properties for stat collector conf |
tree | commitdiff |
2011-02-14 |
pvtroshin | Add limits for presets from jws2 branch |
tree | commitdiff |
2011-02-09 |
pvtroshin | Disable jronn parameter |
tree | commitdiff |
2011-02-09 |
pvtroshin | GlobPlot and DIsembl execs all test passed |
tree | commitdiff |
2011-02-08 |
pvtroshin | Further work on GlobPlot |
tree | commitdiff |
2011-02-03 |
pvtroshin | Parser for DisEMBL results and finished runner, few... |
tree | commitdiff |
2011-02-03 |
pvtroshin | add disembl limits |
tree | commitdiff |
2011-02-03 |
pvtroshin | Change disembl paths to project internal |
tree | commitdiff |
2011-02-03 |
pvtroshin | Disembl further implementation |
tree | commitdiff |
2010-12-21 |
pvtroshin | AAConWS further work |
tree | commitdiff |
2010-12-03 |
pvtroshin | Preset limits for AACon |
tree | commitdiff |
2010-11-29 |
pvtroshin | AAConWS further work |
tree | commitdiff |
2010-11-22 |
pvtroshin | Adding AAConWS |
tree | commitdiff |
2010-07-26 |
pvtroshin | Adding disembl wrapper |
tree | commitdiff |
2010-07-22 |
pvtroshin | Jronn tester |
tree | commitdiff |
2010-07-21 |
pvtroshin | Add local engine properties back to version control |
tree | commitdiff |
2010-07-21 |
pvtroshin | Add JRonn runner, tester, methods to parse jronn outpu... |
tree | commitdiff |
2010-07-20 |
pvtroshin | Changes from JWS3 is merged |
tree | commitdiff |
2010-07-20 |
pvtroshin | Next version of JABA |
tree | commitdiff |
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