2020-05-19 |
gmungoc | Merge branch 'develop' into feature/JAL-3551Pymol |
tree | commitdiff |
2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop |
tree | commitdiff |
2020-05-15 |
gmungoc | JAL-3551 pull up Close Viewer dialog to base class |
tree | commitdiff |
2020-05-12 |
gmungoc | JAL-3518 tidy method, remove obsolete comment |
tree | commitdiff |
2020-05-12 |
gmungoc | JAL-3518 failsafe check for null Jmol filename while... |
tree | commitdiff |
2020-05-11 |
gmungoc | JAL-3551 concatenate colour by sequence commands for... |
tree | commitdiff |
2020-05-11 |
gmungoc | JAL-2422 JAL-3551 viewer text/variables generalised... |
tree | commitdiff |
2020-05-11 |
gmungoc | JAL-2422 restore saved ChimeraX session from project |
tree | commitdiff |
2020-04-30 |
gmungoc | JAL-3551 save structure viewer session refactorings... |
tree | commitdiff |
2020-04-30 |
gmungoc | JAL-3551 tidied error handling for HTTP request |
tree | commitdiff |
2020-04-25 |
gmungoc | Merge branch 'develop' into feature/JAL-3551Pymol |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3407 add GPL license to Jalview source files |
tree | commitdiff |
2020-03-31 |
gmungoc | JAL-3210 JAL-3130 merge changes to JSON processing |
tree | commitdiff |
2020-03-30 |
gmungoc | JAL-3210 debug logging commented out |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-03-16 |
gmungoc | JAL-3551 tidying, improved commands, fix Jmol model... |
tree | commitdiff |
2020-03-16 |
gmungoc | JAL-3551 the correct PyMOL colour by chain command |
tree | commitdiff |
2020-03-13 |
gmungoc | JAL-3551 working proof of concept of Jalview driving... |
tree | commitdiff |
2020-03-09 |
gmungoc | Merge branch 'develop' into feature/JAL-2422ChimeraX |
tree | commitdiff |
2020-03-03 |
gmungoc | JAL-3158 superseded superposeStructures methods removed |
tree | commitdiff |
2020-03-03 |
gmungoc | JAL-3518 more pull up / test coverage of structure... |
tree | commitdiff |
2020-02-29 |
gmungoc | JAL-3518 correct override for ChimeraX colour by residues |
tree | commitdiff |
2020-02-28 |
gmungoc | JAL-3518 basic refactoring / pull up of superposeStruct... |
tree | commitdiff |
2020-02-21 |
gmungoc | JAL-3518 more extraction of ChimeraX commands as overrides |
tree | commitdiff |
2020-02-21 |
gmungoc | JAL-2422 tidy of methods and parameters |
tree | commitdiff |
2020-02-21 |
gmungoc | JAL-2422 general pull-up/removal of common or unused... |
tree | commitdiff |
2020-02-20 |
gmungoc | JAL-2422 pull-up refactoring of structure commands... |
tree | commitdiff |
2020-02-04 |
gmungoc | JAL-2422 pull up refactoring in preparation for Chimera... |
tree | commitdiff |
2020-01-31 |
gmungoc | JAL-2422 temporary hacks removed; use hex colours for... |
tree | commitdiff |
2020-01-30 |
gmungoc | JAL-2422 save/restore ChimeraX session |
tree | commitdiff |
2020-01-28 |
gmungoc | JAL-2422 ChimeraX added to Preferences |
tree | commitdiff |
2020-01-14 |
gmungoc | JAL-2422 proof of concept adaptations for ChimeraX... |
tree | commitdiff |
2019-12-13 |
gmungoc | JAL-2422 'label' command to highlight ChimeraX residue... |
tree | commitdiff |
2019-12-13 |
gmungoc | JAL-2422 write Jalview features to ChimeraX via command... |
tree | commitdiff |
2019-12-13 |
gmungoc | JAL-2422 basic proof of concept of ChimeraX opened... |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-3187 initial refactoring towards peptide variant... |
tree | commitdiff |
2019-06-14 |
gmungoc | JAL-3302 transfer visible 'linked' features to Chimera |
tree | commitdiff |
2019-06-11 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-06-11 |
gmungoc | JAL-3143 also parse "phase" from JSON response if present |
tree | commitdiff |
2019-06-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-06-07 |
gmungoc | JAL-2738 use GeneLocus extends DBRefEntry to hold chrom... |
tree | commitdiff |
2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-05-31 |
Ben Soares | JAL-3247 Adjusted Uninstall Old Jalview.app to just... |
tree | commitdiff |
2019-05-29 |
gmungoc | JAL-2738 accept .csi, default to GRCh37:homo_sapiens... |
tree | commitdiff |
2019-05-06 |
gmungoc | JAL-3244 delete obsolete method |
tree | commitdiff |
2019-04-26 |
gmungoc | JAL-2743 class Javadoc |
tree | commitdiff |
2019-04-23 |
Jim Procter | Merge branch 'develop' into bug/JAL-3224_getdown_change... |
tree | commitdiff |
2019-04-18 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-04-18 |
gmungoc | JAL-3193 dbSource always "ENSEMBL" |
tree | commitdiff |
2019-04-16 |
hansonr | localizes Thread colourby so that it does not cause... |
tree | commitdiff |
2019-04-15 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-04-11 |
Jim Procter | Merge branch 'develop' into task/JAL-3130_Java_11_inves... |
tree | commitdiff |
2019-04-10 |
gmungoc | JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org |
tree | commitdiff |
2019-04-10 |
gmungoc | JAL-3018 REST version updated to 10.0 |
tree | commitdiff |
2019-04-04 |
Ben Soares | JAL-3130 trying to be Java 1.8 source compatible -... |
tree | commitdiff |
2019-04-03 |
hansonr | replacing @j2sNative with @j2sIgnore where appropriate... |
tree | commitdiff |
2019-04-01 |
gmungoc | JAL-3032 use small example Ensembl gene for JalviewJS |
tree | commitdiff |
2019-04-01 |
hansonr | JSON refactoring of a few methods; fixing JavaScript... |
tree | commitdiff |
2019-03-21 |
Ben Soares | JAL-3130 Replaced deprecated Class.newInstance() with... |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
tree | commitdiff |
2019-03-19 |
gmungoc | JAL-3210 code formatting only |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-03-08 |
gmungoc | JAL-3193 defensive trim of URL read from properties... |
tree | commitdiff |
2019-02-28 |
gmungoc | Merge branch 'feature/JAL-3143ensemblJSON' into merge... |
tree | commitdiff |
2019-02-20 |
gmungoc | Merge branch 'feature/JAL-3143ensemblJSON' into feature... |
tree | commitdiff |
2019-02-19 |
gmungoc | JAL-3187 hacks to get peptide variant in to Jmol hover... |
tree | commitdiff |
2019-01-29 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... |
tree | commitdiff |
2019-01-29 |
gmungoc | Merge branch 'feature/JAL-3143ensemblJSON' into trialMerge |
tree | commitdiff |
2019-01-29 |
gmungoc | JAL-3143 format alleles array for feature description |
tree | commitdiff |
2019-01-29 |
hansonr | time check, iterators |
tree | commitdiff |
2019-01-29 |
hansonr | more iterators out; some time checks |
tree | commitdiff |
2019-01-26 |
hansonr | Platform.timecheck calls removed or commented out. |
tree | commitdiff |
2019-01-26 |
hansonr | Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -... |
tree | commitdiff |
2019-01-25 |
hansonr | JSON refactoring |
tree | commitdiff |
2019-01-25 |
gmungoc | JAL-3187 don't compute variant features on peptide... |
tree | commitdiff |
2019-01-24 |
gmungoc | JAL-3018 Ensembl version updated to 9.0 |
tree | commitdiff |
2019-01-18 |
gmungoc | JAL-3143 'id' not 'ID' attribute drives generation... |
tree | commitdiff |
2018-12-25 |
hansonr | better Jmol help link |
tree | commitdiff |
2018-12-06 |
gmungoc | Merge branch 'develop' into Jalview-BH/JAL-3026-JAL... |
tree | commitdiff |
2018-12-06 |
gmungoc | JAL-1854 fix Checkstyle import violations |
tree | commitdiff |
2018-11-19 |
gmungoc | JAL-3032 reinstate methods now available in SwingJS |
tree | commitdiff |
2018-11-14 |
gmungoc | JAL-3032 don't throw Exception to signal chain not... |
tree | commitdiff |
2018-11-14 |
gmungoc | JAL-3152 holding patch for colour Jmol by sequence |
tree | commitdiff |
2018-11-12 |
gmungoc | JAL-3076 JalviewJS requires lower case content-type... |
tree | commitdiff |
2018-11-11 |
hansonr | adds explicit AJAX-allowed |
tree | commitdiff |
2018-11-01 |
gmungoc | Merge branch 'feature/JAL-3143ensemblJSON' into |
tree | commitdiff |
2018-11-01 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026' into |
tree | commitdiff |
2018-10-31 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree |
tree | commitdiff |
2018-10-31 |
gmungoc | JAL-3026 skip unsupported HttpURLConnection methods... |
tree | commitdiff |
2018-10-25 |
gmungoc | JAL-3143 comma-delimited feature attributes for alleles, |
tree | commitdiff |
2018-10-25 |
gmungoc | JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF |
tree | commitdiff |
2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
tree | commitdiff |
2018-09-03 |
gmungoc | JAL-3076 fetch Ensembl sequence as JSON instead of... |
tree | commitdiff |
2018-09-03 |
Jim Procter | JAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId |
tree | commitdiff |
2018-08-27 |
hansonr | JAL-3026 Jmol functioning; some issues |
tree | commitdiff |
2018-08-24 |
hansonr | JAL-3026 GD#107,128,130,139 build-site.xml |
tree | commitdiff |
2018-08-21 |
hansonr | mc_view references were MCview |
tree | commitdiff |
next |