2018-01-16 |
gmungoc | JAL-2679 use object_type=Transcript for lookup of Paren... |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
2017-12-04 |
gmungoc | JAL-2850 JAL-1766 option to load contig sequence refere... |
tree | commitdiff |
2017-12-01 |
gmungoc | JAL-2835 spike updated to latest (use specific SO term... |
tree | commitdiff |
2017-11-30 |
gmungoc | JAL-1766 additional tests for stub htsjdk wrapper |
tree | commitdiff |
2017-11-15 |
gmungoc | JAL-2835 spike updated with latest |
tree | commitdiff |
2017-11-13 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-11-13 |
gmungoc | JAL-2679 example accession changed to CAD01290 |
tree | commitdiff |
2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
tree | commitdiff |
2017-10-26 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-10-25 |
gmungoc | JAL-2743 fall back to parsing description if chromosome... |
tree | commitdiff |
2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2738 tidy Javadoc, remove debug logging |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2743 look up species and gene loci for Ensembl... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-1739 Javadoc updated for Lambda expression parser... |
tree | commitdiff |
2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
tree | commitdiff |
2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
tree | commitdiff |
2017-10-23 |
Jim Procter | Merge branch 'bug/JAL-2253' into develop |
tree | commitdiff |
2017-10-23 |
gmungoc | JAL-1854 keep fallthrough but with comment to suppress... |
tree | commitdiff |
2017-10-23 |
gmungoc | JAL-1854 remove fallthrough of switch case (Checkstyle... |
tree | commitdiff |
2017-10-20 |
gmungoc | Push 1793 latest to spike branch |
tree | commitdiff |
2017-10-20 |
gmungoc | JAL-2253 pull up constant, additional unit test bug/JAL-2253 |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 add lookup of cds/cdna gene loci |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 add species lookup |
tree | commitdiff |
2017-10-19 |
gmungoc | JAL-2755 rename EnsemblInfo as EnsemblData, add 'true... |
tree | commitdiff |
2017-10-17 |
Jim Procter | JAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain |
tree | commitdiff |
2017-10-10 |
Jim Procter | Merge branch 'codereviews/JAL-1990_IProgressIndicator_j... |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries |
tree | commitdiff |
2017-10-09 |
gmungoc | JAL-2523 convenience method to get model organisms |
tree | commitdiff |
2017-10-04 |
gmungoc | JAL-2523 start of refactoring... |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-10-02 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF |
tree | commitdiff |
2017-10-02 |
gmungoc | JAL-2525 lookup transcript features by Ontology |
tree | commitdiff |
2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry |
tree | commitdiff |
2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on rever... |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader |
tree | commitdiff |
2017-09-25 |
gmungoc | JAL-2738 one constant in codebase for "alleles" attribu... |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes |
tree | commitdiff |
2017-09-22 |
gmungoc | JAL-2738 lookup GRCh38/37 gene mapping |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 add chromosome coordinate mappings to transcripts |
tree | commitdiff |
2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence |
tree | commitdiff |
2017-09-19 |
gmungoc | JAL-1793 wrapper for plain or indexed VCF + simple... |
tree | commitdiff |
2017-08-31 |
gmungoc | JAL-2105 REST versions updated to 6.1 (Ensembl) 6.0... |
tree | commitdiff |
2017-08-31 |
gmungoc | JAL-2253 safer simpler resolution of identifiers using... |
tree | commitdiff |
2017-08-25 |
gmungoc | JAL-2480 suppress debug timing output that got left in |
tree | commitdiff |
2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 add GPL to main sources |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 source formatting |
tree | commitdiff |
2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the... |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2582 comment about IDs being lost if they resembl... |
tree | commitdiff |
2017-06-04 |
Jim Procter | JAL-2582 recognise ENS…P peptide IDs and make two getPa... |
tree | commitdiff |
2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-29 |
Jim Procter | Merge branch 'features/JAL-2465_No-mapping_Jmol-structu... |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters |
tree | commitdiff |
2017-05-18 |
gmungoc | JAL-2490 retrieve visible features only |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2525 put in missing "transcript" feature type |
tree | commitdiff |
2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s... |
tree | commitdiff |
2017-05-12 |
gmungoc | JAL-2480 renamed java.util.RangeComparator to IntRangeC... |
tree | commitdiff |
2017-05-09 |
gmungoc | JAL-2505 use constructors to set (what will be) final... |
tree | commitdiff |
2017-05-08 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
tree | commitdiff |
2017-05-03 |
gmungoc | JAL-2105 Ensembl REST now at 5.0 |
tree | commitdiff |
2017-05-01 |
tcofoegbu | JAL-2465 bugfix and rerefactor renamed getPdbFile(... |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-26 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
tree | commitdiff |
2017-04-24 |
gmungoc | JAL-2487 remove redundant refreshGUI to minimise thread... |
tree | commitdiff |
2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
tree | commitdiff |
2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column... |
tree | commitdiff |
2017-03-21 |
gmungoc | JAL-2438 check for null FeatureRenderer |
tree | commitdiff |
2017-03-15 |
gmungoc | JAL-2443 push getResidueBoxColour inside getResidueColour |
tree | commitdiff |
2017-03-13 |
gmungoc | JAL-2438 FeatureColourFinder refactored from FeatureRen... |
tree | commitdiff |
2017-03-08 |
gmungoc | JAL-2430 colour columns hidden in alignment gray on... |
tree | commitdiff |
2017-03-08 |
gmungoc | JAL-2295 avoid quotes breaking attribute value parsing |
tree | commitdiff |
2017-03-07 |
gmungoc | JAL-2295 status messages for Chimera attributes set... |
tree | commitdiff |
2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes... |
tree | commitdiff |
2017-02-09 |
gmungoc | Merge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory |
tree | commitdiff |
2017-01-23 |
gmungoc | JAL-2379 made SparseMatrix.divide() so as to exactly... |
tree | commitdiff |
2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2017-01-17 |
gmungoc | JAL-2379 SparseDoubleArray added (for use by SparseMatrix) |
tree | commitdiff |
2017-01-09 |
gmungoc | JAL-2371 remove ColourSchemeI.findColour(c), pure inter... |
tree | commitdiff |
2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
tree | commitdiff |
2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
tree | commitdiff |
2016-12-12 |
gmungoc | JAL-2632 corrected lookup of residue colour |
tree | commitdiff |
2016-12-09 |
gmungoc | JAL-2105 updated for reviewed REST version 4.8 |
tree | commitdiff |
2016-12-08 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-12-07 |
gmungoc | JAL-2354 handle error response when fetching features |
tree | commitdiff |
2016-12-02 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-30 |
Jim Procter | Merge branch 'features/JAL-2320_closeChimeraAction... |
tree | commitdiff |
2016-11-29 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-11-23 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
2016-11-22 |
Jim Procter | Merge branch 'features/JAL-2177_update_jmol_to_14.6... |
tree | commitdiff |
2016-11-17 |
gmungoc | JAL-98 javadoc, third party acknowledgements (and very... |
tree | commitdiff |
2016-11-16 |
gmungoc | JAL-2296 unit test for reading Chimera attributes to... |
tree | commitdiff |
2016-11-16 |
gmungoc | Merge branch 'develop' into features/JAL-2295setChimera... |
tree | commitdiff |
next |