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JAL-2529 add object_type=cdna to EnsemblCdna parameters
[jalview.git]
/
src
/
jalview
/
gui
/
2017-05-23
gmungoc
JAL-2490 find features for export as GFF, JAL-2548...
tree
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commitdiff
2017-05-23
gmungoc
JAL-2490 tidy code and tests for feature export in...
tree
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commitdiff
2017-05-22
gmungoc
JAL-2505 updates after conflicting merge of JAL-2504
tree
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commitdiff
2017-05-22
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-22
gmungoc
JAL-2504 update the right feature colour when creating...
bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-22
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-19
gmungoc
JAL-2526 removed redundant call to Sequence.findPosition()
tree
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commitdiff
2017-05-18
gmungoc
JAL-2490 lookup sequence features for "labelClass"
tree
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commitdiff
2017-05-18
gmungoc
JAL-2490 lookup features at each column position
tree
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commitdiff
2017-05-18
gmungoc
JAL-2543 html-encode quote characters in feature descri...
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'bug/JAL-2510amendFeatures' into develop
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
tree
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commitdiff
2017-05-17
gmungoc
JAL-2504 use (and update) defaults for new feature...
tree
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commitdiff
2017-05-17
gmungoc
Merge branch 'develop' into bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-15
gmungoc
JAL-2532 new feature types and colour changes from...
tree
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commitdiff
2017-05-15
Jim Procter
Merge branch 'features/JAL-2376_add-horizontal-bar...
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-15
gmungoc
JAL-2480 redundant code (from merge?) removed
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
tree
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commitdiff
2017-05-12
Jim Procter
JAL-2435 mirror antiAlias setting between cDNA and...
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
tree
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commitdiff
2017-05-12
gmungoc
JAL-2480 efficient test for features present on sequence
tree
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commitdiff
2017-05-10
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-10
kiramt
JAL-2522 Fix to cursor scrolling
tree
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commitdiff
2017-05-09
gmungoc
JAL-1632 correct i18n and NPE
tree
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commitdiff
2017-05-09
kiramt
JAL-2388 Added checkbox to toggle hidden columns menu...
tree
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commitdiff
2017-05-08
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-08
gmungoc
JAL-1632 i18n for warning messages
tree
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commitdiff
2017-05-08
kiramt
JAL-2512 Fix to show non-gap positions in None colour...
tree
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commitdiff
2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-05-05
gmungoc
JAL-964 JAL-2510 update Feature Settings from Amend...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-04
gmungoc
JAL-2506 allow graduated colour as default in new Seque...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2510 ensure modified feature type is displayed
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2504 allow feature type to be specified for Create...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-04
gmungoc
JAL-2505 delete and readd amended sequence feature
tree
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commitdiff
2017-05-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2393 JAL-2416 refresh the score model menu when...
features/JAL-2393customMatrices
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 show threshold slider for quantitative annotat...
tree
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commitdiff
2017-05-03
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering value...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 simplify code
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 validate CalculationChooser when selection...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
tree
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commitdiff
2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 inlined two 1-line methods
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2376 copied out patch from Phyre branch
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
|
commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 desktop: filter/select columns by threshold...
tree
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commitdiff
2017-04-27
gmungoc
JAL-2492 use SequenceFeatures.getNonPositionalFeatures()
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/features/JAL-2388h...
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 last separation of hidden columns/col selection
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 Tidies and unit tests
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Reverted and re-did applet changes
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Tidies and other corrections so applet compiles
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 And corrected OverviewCanvas for applet
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Updated applet to show/hide hidden regions...
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Working hidden regions hide/show in desktop
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Finished split of hidden columns and selected...
tree
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commitdiff
2017-04-24
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-24
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
|
commitdiff
2017-04-24
kiramt
JAL-2439 Fixed opposite out-by-one problem in wrapped...
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fix to hidden column marker being one row...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-04-21
gmungoc
JAL-2423 tweak tree panel title, add Spanish text
tree
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commitdiff
2017-04-21
kiramt
JAL-2388 Tidies
tree
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commitdiff
2017-04-21
kiramt
JAL-2388 Alignment col and row collections with iterators
tree
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commitdiff
2017-04-19
gmungoc
JAL-2435 mirror font changes with middle mouse drag
tree
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commitdiff
2017-04-19
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-04-19
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-04-19
gmungoc
JAL-2483 use SequenceFeatures to look up groups, types...
tree
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commitdiff
2017-04-18
gmungoc
JAL-2480 SequenceFeaturesI encapsulates features api
tree
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commitdiff
2017-04-17
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-04-12
gmungoc
JAL-1632 removed check for aligned sequences for Tree...
tree
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commitdiff
2017-04-12
gmungoc
JAL-1632 remove unused check for sequences aligned
tree
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commitdiff
2017-04-12
gmungoc
JAL-1632 one PCA/Tree per panel, closed when panel...
tree
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commitdiff
2017-04-11
tcofoegbu
Pull from develop
features/JAL-2473_set-minimium-dimensions
tree
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commitdiff
2017-04-11
tcofoegbu
JAL-2473 removed unused fields in JalviewDialog
tree
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commitdiff
2017-04-11
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
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