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Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
[jalview.git]
/
src
/
jalview
/
gui
/
2015-03-25
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-03-25
gmungoc
JAL-1264 adding show/hide annotation options to applet
tree
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commitdiff
2015-03-25
tcofoegbu
Merge branch 'features/JAL-1667_PDBe_Search_API' into...
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1667 clean up commented codes in PopupMenu.java...
tree
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commitdiff
2015-03-25
tcofoegbu
Merge commit
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1668 Tab for summary config, auto refresh after...
tree
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commitdiff
2015-03-23
gmungoc
JAL-845 restore SplitFrame size from project; enable...
tree
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commitdiff
2015-03-23
gmungoc
Merge branch 'features/sequenceFeatureRefactor' into...
tree
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commitdiff
2015-03-19
gmungoc
JAL-845 fix bug in 3-to-1 scaling of protein from cDNA
tree
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commitdiff
2015-03-18
gmungoc
JAL-845 adjust both sides of split frame when changing...
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 added PDBDocFieldPreference for configuring...
tree
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commitdiff
2015-03-17
gmungoc
JAL-1687 ignore case when determining if sequence match...
tree
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commitdiff
2015-03-16
gmungoc
JAL-845 tweaks and bug fixes for split frame view
tree
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commitdiff
2015-03-16
Charles Ofoegbu
JAL-1668 added validation for manual entry of pdb struc...
tree
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commitdiff
2015-03-15
Charles Ofoegbu
JAL-1667 updated test and internationalization messages
tree
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commitdiff
2015-03-12
gmungoc
JAL-1544 sequece now sequence
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 start cDNA consensus on 'add alignment' (as...
tree
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commitdiff
2015-03-11
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 smarter test for 'mappability' when adding...
tree
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commitdiff
2015-03-10
gmungoc
JAL-1681 show cDNA consensus on protein alignment ...
tree
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commitdiff
2015-03-09
Jim Procter
Merge branch 'features/JAL-1565_jpred4' into develop
tree
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commitdiff
2015-03-09
Jim Procter
JAL-1565 loading a concise file causes insertions to...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1668 added filtering and sorting capabilites
tree
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commitdiff
2015-03-06
Jim Procter
Merge branch 'develop' into features/JAL-845splitPaneMe...
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1667 refactoring to support JAL-1668
tree
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commitdiff
2015-03-04
Charles Ofoegbu
JAL-1668 First version JAL-1668
tree
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commitdiff
2015-03-04
gmungoc
JAL-845 bug fixes correcting linked editing
tree
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commitdiff
2015-03-03
gmungoc
JAL-845 refactor / typo fix
tree
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commitdiff
2015-03-03
gmungoc
JAL-845 implement alignment of protein to match cDNA...
tree
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commitdiff
2015-03-03
gmungoc
JAL-1452 nucleotide/protein default colour; JAL-845...
tree
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commitdiff
2015-03-02
Charles Ofoegbu
house keeping
tree
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commitdiff
2015-02-27
gmungoc
JAL-1452 distinct colour preferences for nucleotide...
tree
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commitdiff
2015-02-27
gmungoc
JAL-845 SplitFrame for "show product" and after alignin...
tree
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commitdiff
2015-02-26
Charles Ofoegbu
JAL-1667 PDBe Search Interface implementation
tree
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commitdiff
2015-02-25
gmungoc
JAL-1677 commenting use of AlignViewport.gatherViewsHere
tree
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commitdiff
2015-02-24
gmungoc
JAL-845 set top and bottom seq id widths the same
tree
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commitdiff
2015-02-24
gmungoc
JAL-1677 save/restore SplitFrame to Jalview project
tree
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commitdiff
2015-02-23
gmungoc
JAL-1619 split frame now offered in applet 'input from...
tree
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commitdiff
2015-02-20
gmungoc
JAL-1674 update both status bars when mousing over...
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-19
gmungoc
JAL-845 applet colour by tree; translate as cDNA; pull...
tree
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commitdiff
2015-02-13
gmungoc
JAL-845 first rough applet SplitFrame (add parameter...
tree
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commitdiff
2015-02-12
gmungoc
JAL-1633 set file format on 'translate cDNA'
tree
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commitdiff
2015-02-12
gmungoc
Merge remote-tracking branch 'origin/merge/JAL-845_JAL...
tree
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commitdiff
2015-02-11
gmungoc
JAL-845 handling eXpand/Gather split frame views
tree
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commitdiff
2015-02-11
Jim Procter
JAL-1655 JAL-845 special support to set column width...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-845 avoid OOBException when method is called with...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-969 use AlignViewportI interface instance where...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-1654 allow font to be specified without modifying...
tree
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commitdiff
2015-02-10
Jim Procter
note about preserving/reinstating custom grid geometry...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1640 make font-size changes modify grid size again
tree
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commitdiff
2015-02-10
Jim Procter
JAL-845 - portability patch - workaround for lastToken...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-845 @mungoc TODO comments - addAlignment needs...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-966 @mungo TODO complete: List rather than bare...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'features/JAL-845splitPaneMergeDevelop...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'develop' into JAL-1640_stylesettings
tree
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commitdiff
2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 new menu allowing view settings to be transfer...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 more properties moved to style bean and ration...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 JAL-966 is for boolean getter on AlignViewportI
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 SplitFrame key bindings delegation to AlignFram...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 preparation for awareness of AlignFrame in...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-966 allow access to viewport interface from alignPanel
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge commit
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 revised Finder's implementation to use a flag...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 JAL-1551 formatting/imports/remove dead code
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 updates to use get/setter on viewportI: effici...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 separated style operations into a new ViewStyl...
tree
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commitdiff
2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC function...
features/JAL-845linkedProteinDnaEditing
tree
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 drop the hiddenColumns flag in favour of checki...
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
gmungoc
JAL-1635 show warning if less than 3 columns selected...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
tree
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commitdiff
2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
tree
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commitdiff
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Further abstractions and clean up
tree
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commitdiff
2015-01-20
Charles Ofoegbu
basic house keeping
tree
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commitdiff
2015-01-20
Charles Ofoegbu
JAL-1553 enhancement of column selection by annotation...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1636 fix for mouseover of 'X' in translated protein
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1372 i18n and tweaking set/unset representative...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 method to hide insertions to current sequence...
tree
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commitdiff
2015-01-18
gmungoc
JAL-1619 refactoring wip
tree
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commitdiff
2015-01-16
gmungoc
JAL-1619 refactoring in progress for Dna translation
tree
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commitdiff
2015-01-14
gmungoc
JAL-1619 modified repaint after 'Align As' action
tree
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commitdiff
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