JAL-1601 Create SecStructPredTask class
[jalview.git] / src / jalview / ws2 /
2023-10-13 Mateusz WarownyJAL-1601 Create SecStructPredTask class
2023-10-13 Mateusz WarownyJAL-1601 Load and display JPred4 service in AlignFrame
2023-10-13 Mateusz WarownyJAL-1601 Implement JPred4 WS client and discoverer
2023-10-05 Mateusz WarownyJAL-1601 Create action and task for sec. str. pred...
2023-10-05 Mateusz WarownyJAL-1601 Implement JPred4 client and discoverer
2023-10-05 Mateusz WarownyJAL-1601 Add sec str pred provider and client interfaces
2023-09-14 Mateusz WarownyJAL-4241 Flter empty columns from annotation service... mmw/bug/JAL-4241-annotation-alignment-fix-slivka
2023-09-12 Mateusz WarownyJAL-4241 Fix non-standard residues replacement.
2023-07-31 Mateusz WarownyJAL-4241 Fix annotation and feature alignment with...
2023-07-17 Mateusz WarownyJAL-4232 Disable menu items for RNA services for proteins. patch/JAL-4232-disable-unavailable-services
2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw... mmw/JAL-4199-task-execution-update
2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar
2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers
2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask
2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask
2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped
2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports
2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask
2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields
2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0
2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code
2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef
2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes...
2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager
2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports
2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks
2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot...
2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo
2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default
2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events
2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport
2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories
2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client
2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs feature/JAL-3954-ebi-phmmer
2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails
2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to...
2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status
2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service
2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment...
2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER
2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions
2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer
2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing...
2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message
2023-05-08 Mateusz WarownyJAL-3954 Implement proxy ws client for phmmer
2023-05-08 Mateusz WarownyJAL-3954 Create getters for Credentials record
2023-05-08 Mateusz WarownyJAL-3954 Create ParamDatastore builder for phmmer
2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty
2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with...
2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop
2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator...
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse
2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables...
2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console
2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for... JAL-3878_ws-overhaul-3
2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard...
2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web...
2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery
2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu
2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka.
2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces
2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient
2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI
2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task
2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name
2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services
2022-04-05 Mateusz WarownyJAL-3878 Fix method name to fireTaskRestarted
2022-04-05 Mateusz WarownyJAL-3878 Make BaseJob setters public so they can be...
2022-04-05 Mateusz WarownyJAL-3878 Add fullName to BaseAction class which combine...
2022-04-05 Mateusz WarownyJAL-3878 Move status precedence list to JobStatus class
2022-04-05 Mateusz WarownyJAL-3878 Add uid to WS Tasks
2022-03-28 Mateusz WarownyJAL-3878 Fix discoverer being stuck on BEGIN state...
2022-03-25 Mateusz WarownyJAL-3878 Change align frame added to desktop to correct one
2022-03-25 Mateusz WarownyJAL-3878 Wrap infoPanel updates with SwingUtilities...
2022-03-25 Mateusz WarownyJAL-3878 Fix re-alignment-capable services detection.
2022-03-25 Mateusz WarownyJAL-3878 Clear services list on reload.
2022-03-25 Mateusz WarownyJAL-3878 Fix task status precedence calculation
2022-03-25 Mateusz WarownyJAL-3878 Fix NullPointerExceptions caused by nulls...
2022-03-25 Mateusz WarownyJAL3878 Implement slivka service discoverer
2022-03-25 Mateusz WarownyJAL-3878 Move action name initialization to its own...
2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services
2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set
2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters
2022-03-18 Mateusz WarownyJAL-3878 Create abstract ws discoverer providing common...
2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui
2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils
2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager.
2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services.
2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction.
2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions.
2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to...
2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes
2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods
2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interacti...
2022-03-02 Mateusz WarownyJAL-3878 Fix typo in method name (getAlignemnt)
2022-02-28 Mateusz WarownyJAL-3878 Separate server job handle from task's sub...
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