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JAL-3541 removed clover report generation debug flag (utf-8 encoding enforcement...
[jalview.git]
/
src
/
jalview
/
2020-02-21
Jim Procter
Merge branch 'bug/JAL-3536getCrossrefTwice' into develop
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 ensure transparency slider position is updated...
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 avoid repainting twice in splitframe
tree
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commitdiff
2020-02-21
Jim Procter
Merge branch 'develop' into features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 nice to have enabling/disabling of apply/cance...
features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 use the recommended way of catching tab select...
tree
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commitdiff
2020-02-20
gmungoc
JAL-3187 repaint complement after loading on features
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 individual feature settings panel has revert...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 i18n for titles in windows/tabs
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3535 todo re titles for CDS and Protein views in...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 - tabbed pane is nulled when feature settings...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 JAL-2764 close feature settings when parent...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3538 anti-aliasing enabled by default
tree
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commitdiff
2020-02-18
Jim Procter
JAl-3187 JAL-3535 JAL-3534 update open feature settings...
tree
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commitdiff
2020-02-18
Mungo Carstairs
JAL-3536 JAL-3187 don't create duplicate CDS-to-protein...
bug/JAL-3536getCrossrefTwice
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3534 patch for simple case (Protein or Nucleotide...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 better semantics for feature settings closed...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3187 alternative solution - gather feature settings...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 applet alignFrame needs new api method
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 first stab at ‘show CDS/Protein Settings’...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 view controller UI api method to show feature...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 convenience method on SplitContainerI to retri...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-1354 JAL-3528 report missing keys for MessageManage...
tree
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commitdiff
2020-01-28
gmungoc
Merge branch 'feature/JAL-3121gffAttributeMap' into...
tree
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commitdiff
2020-01-28
gmungoc
JAL-3187 one more obsolete method removed
tree
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commitdiff
2020-01-24
gmungoc
JAL=3121 more data format validation/tests, help text...
feature/JAL-3121gffAttributeMap
tree
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commitdiff
2020-01-23
gmungoc
JAL-3121 'attributes map' in GFF3 without special ...
tree
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commitdiff
2020-01-16
Jim Procter
Merge branch 'improvement/JAL-3474_lots_of_.cvsignore_f...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-11-01
Ben Soares
JAL-3474 removed all .cvsignore files stored in the...
improvement/JAL-3474_lots_of_.cvsignore_files
tree
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commitdiff
2019-09-26
gmungoc
JAL-2481 remove code duplication left by merge
tree
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commitdiff
2019-09-26
gmungoc
JAL-3441 action double-click in Feature Type column...
tree
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commitdiff
2019-08-23
gmungoc
JAL-3141 correct cast of spinner value
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 slightly cleaner parsing of, and unit test...
tree
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commitdiff
2019-08-22
gmungoc
Merge branch 'develop' into feature/JAL-3121gffAttributeMap
tree
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commitdiff
2019-08-22
gmungoc
JAL-3187 case-insensitive codon variant calculation
tree
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commitdiff
2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
tree
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commitdiff
2019-08-22
gmungoc
JAL-3187 one more obsolete method removed
tree
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commitdiff
2019-08-21
gmungoc
JAL-3187 minor code tidying, todo removal
tree
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commitdiff
2019-08-09
gmungoc
JAL-3187 removal of variant feature (non-virtual) trans...
tree
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commitdiff
2019-08-07
gmungoc
JAL-3187 (fudge) look in both alignments for stored...
feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-31
gmungoc
JAL-3389 add .py to restored Chimera session filename...
tree
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commitdiff
2019-07-31
gmungoc
Merge branch 'bug/JAL-3388structureChooserSorting'...
tree
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commitdiff
2019-07-30
gmungoc
JAL-3198 more efficient Sequence.getDisplayId()
tree
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commitdiff
2019-07-30
gmungoc
JAL-3388 correct class for column 0 Ref Sequence
bug/JAL-3388structureChooserSorting
tree
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commitdiff
2019-07-29
gmungoc
JAL-3386 correct wrapped width calculation for headless...
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 add seq-annotations gap to cheight not to...
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 Javadoc added for getWrappedHeight()
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 corrected wrapped widths height for IdCanvas
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 include seq-annotation spacing in getWrappedHe...
tree
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commitdiff
2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
tree
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commitdiff
2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
tree
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
tree
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commitdiff
2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
tree
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
tree
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commitdiff
2019-07-16
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-16
gmungoc
JAL-2987 tolerate null double values when formatting...
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-08
gmungoc
JAL-3187 derived peptide variants tweaks and tests
tree
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commitdiff
2019-07-05
gmungoc
JAL-3187 initial refactoring towards peptide variant...
tree
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commitdiff
2019-07-05
gmungoc
JAL-1793 apply URL decoding when saving VCF attribute...
tree
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commitdiff
2019-07-02
Jim Procter
JAL-3111 JAL-3280 hide the version check preference...
tree
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commitdiff
2019-07-02
Jim Procter
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
tree
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commitdiff
2019-07-01
Ben Soares
JAL-3333 removed unused variable
tree
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commitdiff
2019-07-01
Ben Soares
JAL-3333 using floats for smoother weighting
tree
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commitdiff
2019-06-29
Ben Soares
JAL-3333 Sorry couldn't resist adding a bit of weightin...
tree
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commitdiff
2019-06-29
Ben Soares
JAL-3333 Title text now appears instantly. Altering...
tree
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commitdiff
2019-06-28
Ben Soares
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 changed RGB model. Tested in mojave and Windo...
tree
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commitdiff
2019-06-28
Jim Procter
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Smooth rotation of image now too
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 added height to rotating image preferred size
tree
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commitdiff
2019-06-28
Jim Procter
JAL-3330 apply Ensembl feature settings when showing...
bug/JAL-3330_backpropagateEnsemblFeatureColours
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Replaced title text rendered in animated image...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3334 fix - always load full SO to resolve the seque...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3111 get rid of nasty tab characters
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3332 test to check for duplicate db sources and...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 javadoc
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating view after fetch...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 dbreffetcher: record any feature display model...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating views when show...
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
tree
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commitdiff
2019-06-19
Ben Soares
Merge branch 'merge/JAL-3310_and_JAL-3300' into develop
tree
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commitdiff
2019-06-19
Ben Soares
JAL-3321 Last pieces of the getdown-launcher.jar upgrad...
tree
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commitdiff
2019-06-19
Jim Procter
Merge branch 'develop' into documentation/JAL-3111_rele...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3313 don't double count mapped codons
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-2830_editManglesDatasetSequence...
tree
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commitdiff
2019-06-18
Ben Soares
Merge branch 'develop' into merge/JAL-3310_and_JAL...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3187 javadoc
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'bug/JAL-3286duplicatePdbQuery' into develop
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features also for...
tree
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commitdiff
2019-06-18
Ben Soares
JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
tree
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commitdiff
2019-06-18
gmungoc
JAL-3187 i18n show linked features checkboxes
tree
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commitdiff
2019-06-18
gmungoc
JAL-3305 mirror popup menu column selections in split...
tree
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commitdiff
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