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JAL-3683 retrieve job status to output stream
[jalview.git]
/
src
/
jalview
/
2020-07-08
Mateusz Warowny
JAL-3683 retrieve job status to output stream
feature/JAL-3686_slivka_client_js_update
tree
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commitdiff
2020-07-08
Mateusz Warowny
JAL-6386 update slivka client for j2s compatibility
tree
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commitdiff
2020-02-04
MMWarowny
JAL-3515 Change to JvOptionPane wrapper
feature/JAL-3515-slivka-preferences
tree
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commitdiff
2020-02-04
MMWarowny
JAL-3515 Build a WSPreferences page for Slivka services.
tree
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commitdiff
2020-02-04
MMWarowny
JAL-3515 Extract core WSDiscoverer methods to a separat...
tree
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commitdiff
2019-12-05
MMWarowny
JAL-3066 Comment on ambiguous parameter parsing.
tree
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commitdiff
2019-12-05
MMWarowny
JAL-3066 Change Slivka connection to https
tree
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commitdiff
2019-11-28
MMWarowny
JAL-3066 Fix incorrect URL resolving with /slivka prefix.
tree
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commitdiff
2019-11-15
MMWarowny
JAL-3066 Change server to compbio.dundee.ac.uk/slivka
tree
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commitdiff
2019-11-04
MMWarowny
Include missing job states.
tree
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commitdiff
2019-10-11
Mateusz Warowny
JAL-3066 Create labels for fields and hack it to work...
tree
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commitdiff
2019-10-11
Mateusz Warowny
Merge remote-tracking branch 'origin/tasks/JAL-3070_wsi...
tree
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commitdiff
2019-10-11
Mateusz Warowny
JAL-3066 change service type naming to avoid menu entry...
tree
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commitdiff
2019-10-10
Jim Procter
JAL-3070 set calcId and autocalculated flags for annota...
tasks/JAL-3070_wsinterfaces
tree
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commitdiff
2019-10-10
Jim Procter
Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
tree
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commitdiff
2019-10-10
Jim Procter
JAL-3070 registerWorker start its thread automatically...
tree
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commitdiff
2019-10-10
Jim Procter
JAL-3070 use object identity equivalence for lists...
tree
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commitdiff
2019-10-09
Mateusz Warowny
JAL-3066 Read parameters directly from args list allowi...
tree
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commitdiff
2019-10-09
Mateusz Warowny
JAL-3066 Fix log files retrieval.
tree
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commitdiff
2019-10-07
Mateusz Warowny
Jal-3066 Retrieve job log and error log from the server.
tree
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commitdiff
2019-10-07
Jim Procter
Revert "JAL-3070 JAL-3066 fix initialisation of slivka...
tree
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commitdiff
2019-10-07
Mateusz Warowny
JAL-3066 AACon: pass the instance name of the service...
tree
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commitdiff
2019-10-07
Mateusz Warowny
JAL-3066 Check if annotation and features are present...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3066 report job ID when submitted
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3066 debug info: check response when adding feature...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3066 JAL-3070 AACon: pass the name of the service...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3066 hack to instantiate the correct client accordi...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 JAL-3066 provide standard concrete instances...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 JAL-3066 fix initialisation of slivka ServiceW...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 use identity equivalence for workers rather...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 formatting
tree
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commitdiff
2019-10-03
Jim Procter
JAL-3070 reinstate the internal test service URL for...
tree
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commitdiff
2019-10-03
Jim Procter
JAL-3070 slivka service discovery as a background threa...
tree
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commitdiff
2019-10-03
Jim Procter
JAL-3070 alignment analysis service worker UI and setti...
tree
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commitdiff
2019-10-03
Jim Procter
JAL-3070 call checkDone() ASAP to avoid race condition...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 decouple WsMenuEntryProviderI code from JABAWS
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 reorganise prior to refactor
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 make AlignCalcUI service code work only with...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 discoverers return ServiceWithParameter, now...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 decontaminate the ‘preferred service’ methods...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 JAL-3062 tidy up slivka ws menu builder and...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 detect failed/broken annotation web service...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 pull up generic methods for an automatic align...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 TODO
tree
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commitdiff
2019-10-01
Mateusz Warowny
JAL-3066 Sequence annotation services.
tree
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commitdiff
2019-09-27
Mateusz Warowny
JAL-3066 Automatically discoverable Protein sequence...
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 oops - refactor Slivka’s service stub too :)
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 JAL-3066 JAL-3067 refactor annotation web...
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 JAL-3066 JAL-2808 allow feature filter definit...
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 allow SequenceI.findPositions(0,column+1)...
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 cope when dataset sequence is passed
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 JAL-3066 formatting
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(Alignm...
tree
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commitdiff
2019-09-24
Jim Procter
JAL-3070 tidying
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3066 JAL-3070 pull up non-jabaws specific service...
tree
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commitdiff
2019-09-23
Mateusz Warowny
JAL-3066 Annotation Service Instance stub
tree
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commitdiff
2019-09-23
Mateusz Warowny
SlivkaWSDiscoverer formatting fix
tree
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commitdiff
2019-09-23
Mateusz Warowny
JAL-3066 Move common web service methods to abstract...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 configure annotation service manager from...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 ensure RNAAliFold annotation rows display...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 formatting
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 detect presence of existing JABA RNAAliFold...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 match AbstractJabaCalcWorker’s annotation...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 javadoc for (mostly) jabaws specific methods
tree
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commitdiff
2019-09-20
Jim Procter
JAL-3070 rough-and-ready refactor of JABA SequenceAnnot...
tree
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commitdiff
2019-09-20
Jim Procter
JAL-3070 JAL-1379 deferred work on annotation based...
tree
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commitdiff
2019-09-19
Mateusz Warowny
JAL-3066 Auto discover multiple sequence alignment...
tree
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commitdiff
2019-09-17
Jim Procter
JAL-3432 hide the slider when validator has no min...
tree
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commitdiff
2019-09-16
Mateusz Warowny
Set the initial value of the choice field to the defaul...
tree
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commitdiff
2019-09-16
Mateusz Warowny
Add the remaining msa services to the Discoverer
tree
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commitdiff
2019-09-11
Mateusz Warowny
Change choice field to use dropbox instead of radio...
tree
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commitdiff
2019-09-11
Mateusz Warowny
Create generic msa service instance
tree
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commitdiff
2019-09-06
Mateusz Warowny
Merge remote-tracking branch 'origin/alpha/JAL-3066_Jal...
tree
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commitdiff
2019-09-06
Mateusz Warowny
JAL-3066 Working custom parameters for clustalo
tree
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commitdiff
2019-09-06
Jim Procter
JAL-3066 fix compile error (@matesuz - this will confli...
tree
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commitdiff
2019-09-06
Jim Procter
JAL_1426 JAL-3066 update Apache James mime parser and...
tree
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commitdiff
2019-09-05
Mateusz Warowny
JAL-3066 Implement clustaloWS using slivka system.
tree
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commitdiff
2019-08-13
Jim Procter
JAL-3362 keep Java 1.8 build happy by specifying generi...
tree
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commitdiff
2019-08-13
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2019-08-09
gmungoc
JAL-3187 removal of variant feature (non-virtual) trans...
tree
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commitdiff
2019-08-07
gmungoc
JAL-3187 (fudge) look in both alignments for stored...
feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-31
gmungoc
JAL-3389 add .py to restored Chimera session filename...
tree
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commitdiff
2019-07-31
gmungoc
Merge branch 'bug/JAL-3388structureChooserSorting'...
tree
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commitdiff
2019-07-30
gmungoc
JAL-3198 more efficient Sequence.getDisplayId()
tree
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commitdiff
2019-07-30
gmungoc
JAL-3388 correct class for column 0 Ref Sequence
bug/JAL-3388structureChooserSorting
tree
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commitdiff
2019-07-29
gmungoc
JAL-3386 correct wrapped width calculation for headless...
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 add seq-annotations gap to cheight not to...
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 Javadoc added for getWrappedHeight()
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 corrected wrapped widths height for IdCanvas
tree
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commitdiff
2019-07-29
gmungoc
JAL-3377 include seq-annotation spacing in getWrappedHe...
tree
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commitdiff
2019-07-26
gmungoc
Merge branch 'features/JAL-3375vcfValidation' into
tree
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commitdiff
2019-07-26
gmungoc
JAL-1793 only decode specific special characters in...
tree
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commitdiff
2019-07-26
gmungoc
JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
features/JAL-3375vcfValidation
tree
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commitdiff
2019-07-26
gmungoc
JAL-3375 format validate VCF Integer and Float fields
tree
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commitdiff
2019-07-25
gmungoc
JAL-3375 ignore '.' values for VCF data
tree
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commitdiff
2019-07-16
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-16
gmungoc
JAL-2987 tolerate null double values when formatting...
tree
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commitdiff
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