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applet min/max annotation shading parameter documentation JAL-234
[jalview.git]
/
src
/
jalview
/
2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
tree
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commitdiff
2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
tree
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commitdiff
2011-07-22
jprocter
code style
tree
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commitdiff
2011-07-22
jprocter
default parameter for colours in annotation shading...
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commitdiff
2011-07-22
jprocter
method to get a user default colour (JAL-234)
tree
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commitdiff
2011-07-21
jprocter
retrieve all sequences matching a particular name ...
tree
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commitdiff
2011-07-21
jprocter
ensure contents of hash is extended JAL-876
tree
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commitdiff
2011-07-18
jprocter
fixed mouseover problem - still need to deal with flick...
tree
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commitdiff
2011-07-10
jprocter
progress when saving state (JAL-870) and hack to trap...
tree
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commitdiff
2011-07-09
jprocter
documentation for menu item JAL-860
tree
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commitdiff
2011-07-09
jprocter
menu item and constructor to open a bunch of structures...
tree
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commitdiff
2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
tree
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commitdiff
2011-07-09
jprocter
todo re JAL-732
tree
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commitdiff
2011-07-09
jprocter
JAL-868 todo
tree
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commitdiff
2011-07-08
jprocter
open each query result from an alignment datasource...
tree
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commitdiff
2011-07-07
jprocter
comment re JAL-153
tree
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commitdiff
2011-07-07
jprocter
Set job title correctly and pass reason why
tree
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commitdiff
2011-07-06
jprocter
ensure selseq is trimmed to just sequences included...
tree
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commitdiff
2011-07-05
jprocter
Revert "partial patch for JAL-411 - text rendered above...
tree
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commitdiff
2011-07-05
jprocter
partial patch for JAL-411 - text rendered above features
tree
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commitdiff
2011-07-05
jprocter
Revert "Revert "needed for linkedapplets_ng.html (JAL...
tree
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commitdiff
2011-07-05
jprocter
Revert "needed for linkedapplets_ng.html (JAL-859,JAL...
tree
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commitdiff
2011-07-05
jprocter
needed for linkedapplets_ng.html (JAL-859,JAL-469)
tree
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commitdiff
2011-07-05
jprocter
whole frame should be validated.
tree
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commitdiff
2011-07-05
jprocter
ignore any events after manager has already been finalized.
tree
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commitdiff
2011-07-05
jprocter
refactor to send list of model filenames involved in...
tree
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commitdiff
2011-07-05
jprocter
(JAL-856,JAL-621)
tree
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commitdiff
2011-07-04
jprocter
jmb isn't created yet, so use another SSM provider
tree
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commitdiff
2011-07-03
jprocter
TODO re JAL-433 - filter events if alignFrame is specif...
tree
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commitdiff
2011-07-03
jprocter
documentation (JAL-859, JAL-816, JAL-621)
tree
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commitdiff
2011-07-03
jprocter
extracted jalviewlite API calls as separate interface...
tree
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commitdiff
2011-06-30
jprocter
set initial annotation panel height appropriately ...
tree
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commitdiff
2011-06-29
jprocter
repaint image buffer height change (JAL-564) and ensure...
tree
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commitdiff
2011-06-29
jprocter
repaint image buffer resize when panel height changes...
tree
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commitdiff
2011-06-29
jprocter
preliminary patch to reduce problem observed in JAL-546
tree
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commitdiff
2011-06-29
jprocter
ensure annotation height adjuster doesn't disappear...
tree
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commitdiff
2011-06-28
jprocter
fixes JAL-849 - double check after waiting a bit that...
tree
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commitdiff
2011-06-24
jprocter
fix to preserve sequence numbering in MSF (JAL-847)
tree
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commitdiff
2011-06-23
jprocter
jmb isn't created yet, so use another SSM provider
tree
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commitdiff
2011-06-23
jprocter
patch for JAL-846 made targetChain mapping constraint...
tree
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commitdiff
2011-05-30
jprocter
bug for clients using NJTree directly - pwtype should...
tree
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commitdiff
2011-05-30
jprocter
first patch for JAL-838 - allow new typed of PID calcs
tree
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commitdiff
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
tree
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commitdiff
2011-05-17
jprocter
interface for objects at root of a jalview session's
tree
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commitdiff
2011-05-17
jprocter
interface for handlers of alignmentViewPanel events
tree
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commitdiff
2011-05-17
jprocter
cruisecontrol again
tree
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commitdiff
2011-05-17
jprocter
another cc test
tree
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commitdiff
2011-05-17
jprocter
test cruisecontrol
tree
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commitdiff
2011-05-17
jprocter
test cruisecontrol
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commitdiff
2011-05-17
jprocter
ensure all colour statements added to string set
tree
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commitdiff
2011-05-05
jprocter
uncommentable debug message for JAL-771
tree
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commitdiff
2011-05-05
jprocter
improved javascript callback execution thread and provi...
tree
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commitdiff
2011-05-05
jprocter
separation of jmol script command generation from jmol...
tree
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commitdiff
2011-05-05
jprocter
javadoc and informative error message when external...
tree
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commitdiff
2011-05-05
jprocter
ensure feature renderer settings come from the given...
tree
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commitdiff
2011-05-05
jprocter
added simple stdout debug function
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - additional methods to allow jmol colouring...
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - patch to schema to allow jmol colouring state...
tree
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commitdiff
2011-04-25
jprocter
toggle of inclusion/exclusion of views for colouring...
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - ensure Jmol colouring is a radio button
tree
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commitdiff
2011-04-22
jprocter
formatting
tree
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commitdiff
2011-04-22
jprocter
removed useless flag (was always null for button press...
tree
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commitdiff
2011-04-22
jprocter
JAL-823 and JAL-824 - seqColour no longer the default...
tree
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commitdiff
2011-04-22
jprocter
comments re JAL-823 legacy issue
tree
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commitdiff
2011-04-22
jprocter
clarify tooltip
tree
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commitdiff
2011-04-22
jprocter
moved loadingFromArchive flag modification to after...
tree
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commitdiff
2011-04-22
jprocter
option for enabling Jmol colouring mode JAL-824
tree
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commitdiff
2011-04-21
jprocter
JAL-641 patch
tree
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commitdiff
2011-04-21
jprocter
patch for JAL-733
tree
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commitdiff
2011-04-21
jprocter
patch for JAL-820 and JAL-821
tree
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commitdiff
2011-04-21
jprocter
separated alignment annotation height calculation from...
tree
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commitdiff
2011-04-21
jprocter
moved to same place as in jalview.gui
tree
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commitdiff
2011-04-21
jprocter
save and recover graph height, visibility and row posit...
tree
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commitdiff
2011-04-21
jprocter
allow an alignment annotation row to be removed and...
tree
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commitdiff
2011-04-21
jprocter
allow an existing alignment annotation row to be bound...
tree
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commitdiff
2011-04-21
jprocter
added graphHeight attribute to schema (JAL-784)
tree
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commitdiff
2011-04-19
jprocter
avoid race condition when featureRenderer for structure...
tree
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commitdiff
2011-04-19
jprocter
patched XML parser to ensure it properly escapes non...
tree
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commitdiff
2011-04-08
jprocter
todo
tree
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commitdiff
2011-04-08
jprocter
imported properties via -props should never be overwritten
tree
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commitdiff
2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
tree
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commitdiff
2011-04-07
jprocter
resolves JAL-805
tree
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commitdiff
2011-04-07
jprocter
resolves JAL-804
tree
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commitdiff
2011-02-28
jprocter
excess imports
tree
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commitdiff
2011-02-27
jprocter
patch for JAL-780
tree
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commitdiff
2011-02-27
jprocter
patch for occasional ArrayIndexOutOfBounds
tree
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commitdiff
2011-02-27
jprocter
patch for JAL-792
tree
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commitdiff
2011-02-27
jprocter
first patch for JAL-774 - ensure end is a valid bound...
tree
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commitdiff
2011-02-25
jprocter
first approximation for JAL-782 - hint that opaque...
tree
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commitdiff
2011-02-18
jprocter
JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
new alignmentPanel api + JAL-777/JAL-641 debugging
tree
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commitdiff
2011-02-18
jprocter
fix scrolltoposition behaviour and new alignmentPanel api
tree
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commitdiff
2011-02-18
jprocter
fix scrolltoposition behaviour
tree
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commitdiff
2011-02-18
jprocter
JAL-574
tree
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commitdiff
2011-02-18
jprocter
convenience method to discover all Jmols
tree
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commitdiff
2011-02-18
jprocter
JAL-779 and some redraw refinements
tree
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commitdiff
2011-02-18
jprocter
JAl-574
tree
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commitdiff
2011-02-18
jprocter
avoid exceptions for orphaned windows
tree
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commitdiff
next