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thread safety during repaint
[jalview.git]
/
src
/
jalview
/
2007-06-17
jprocter
thread safety during repaint
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commitdiff
2007-06-17
jprocter
null pointer exception fix
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commitdiff
2007-06-17
jprocter
searchresult highlighting on common dataset or specific...
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commitdiff
2007-06-17
jprocter
correct construction of new dataset sequence when resid...
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commitdiff
2007-06-17
jprocter
javadoc
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commitdiff
2007-06-04
jprocter
fix for 'RF' annotation tags and ensured parser is...
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commitdiff
2007-05-28
jprocter
prototype DBRef and Feature Type semantics (for annotat...
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commitdiff
2007-05-28
jprocter
fix compact annotation array routine
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commitdiff
2007-05-28
jprocter
castor mapping unmarshalling logging
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commitdiff
2007-05-28
jprocter
loglevel property constants and castor validation logge...
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commitdiff
2007-05-24
jprocter
castor-1.1 classes (descriptors moved to subpackage)
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commitdiff
2007-05-24
jprocter
castor-1.1 compatible classes from ant task
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commitdiff
2007-05-24
jprocter
jalview 2.0 XML schema versions for backwards compatibi...
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commitdiff
2007-05-22
jprocter
fixed jalview 2.3 bug where gapped aligned codons were...
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commitdiff
2007-05-22
jprocter
refactored document objects and bugfix on jvdataset...
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commitdiff
2007-05-22
amwaterhouse
DONT SET PICKING LABEL
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commitdiff
2007-05-18
jprocter
fixed getObject(VorbaId) lookup in vamsas-client
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commitdiff
2007-05-18
jprocter
update to and from document (and remove deprecated...
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commitdiff
2007-05-18
jprocter
removed uneccessary vamsasLoad commented out.
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commitdiff
2007-05-17
jprocter
refining - still debugging.
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commitdiff
2007-05-17
jprocter
use of proper vamsas client API by Jalview
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commitdiff
2007-05-17
jprocter
modified castor-1.1 library and refactored uk.ac.vamsas
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commitdiff
2007-05-15
amwaterhouse
SequenceListener highlights SearchResults, not just...
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commitdiff
2007-05-10
jprocter
apparent bug in JpredFile parser where annotation was...
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commitdiff
2007-05-10
jprocter
ensure that only annotation referenced in given alignme...
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commitdiff
2007-05-10
jprocter
documentation
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commitdiff
2007-05-10
jprocter
bugfix on copy only referenced annotation in copy const...
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commitdiff
2007-05-10
jprocter
fixed array index out of bounds when not removing align...
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commitdiff
2007-05-10
amwaterhouse
visibility setting
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commitdiff
2007-05-10
amwaterhouse
Keep record of last tooltip
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commitdiff
2007-05-10
amwaterhouse
Visible state of annotation
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commitdiff
2007-05-10
amwaterhouse
Add show all hidden menu
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commitdiff
2007-05-10
amwaterhouse
Dont duplicate annotations in multiple views
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commitdiff
2007-05-10
amwaterhouse
save visible state of annotation
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commitdiff
2007-05-09
jprocter
main method for running from command line and better...
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commitdiff
2007-05-09
amwaterhouse
minor formatting of tooltip
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commitdiff
2007-05-08
jprocter
dialog box menu item naming
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commitdiff
2007-05-08
amwaterhouse
check for null annotations
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commitdiff
2007-05-08
amwaterhouse
set picking label
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commitdiff
2007-05-08
amwaterhouse
instant update when seq colour is pressed
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commitdiff
2007-05-08
amwaterhouse
must specify .CA
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commitdiff
2007-05-08
amwaterhouse
remove system.out
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commitdiff
2007-05-08
amwaterhouse
small sphere for alpha carbon
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commitdiff
2007-05-08
amwaterhouse
addElement
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commitdiff
2007-05-07
amwaterhouse
Image size must allow for scale height
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commitdiff
2007-05-07
amwaterhouse
dif is never used
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commitdiff
2007-05-07
amwaterhouse
Allow for large font sizes
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commitdiff
2007-05-07
amwaterhouse
dont use gold highlights
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commitdiff
2007-05-07
amwaterhouse
Max width for tooltip
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commitdiff
2007-05-07
amwaterhouse
still trying to prevent null painting
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commitdiff
2007-05-07
amwaterhouse
Use id hash to add pdb mappings back to alignment
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commitdiff
2007-05-07
amwaterhouse
tIndex prevented deletion of last annotation
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commitdiff
2007-05-07
amwaterhouse
Dont use gold colouring for highlight
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commitdiff
2007-05-07
amwaterhouse
PDBViewer available if necessary
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commitdiff
2007-05-04
amwaterhouse
Check bounds of loaded comp
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commitdiff
2007-05-04
amwaterhouse
remove system.out
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commitdiff
2007-05-04
amwaterhouse
added
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commitdiff
2007-05-04
amwaterhouse
Add dbrefs before zero length features
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commitdiff
2007-05-04
amwaterhouse
lastCommand check
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commitdiff
2007-05-04
amwaterhouse
Rename AppJMol to AppJmol - also AppJmol works with...
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commitdiff
2007-05-04
amwaterhouse
Renamed to AppJmol
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commitdiff
2007-05-04
amwaterhouse
New example file for version 2.3
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commitdiff
2007-05-04
amwaterhouse
New example file for version 2.3
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commitdiff
2007-05-04
amwaterhouse
Splash screen is not added using normal method, prevent...
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commitdiff
2007-05-04
amwaterhouse
Annotations do not extend when full alignment is adjusted
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commitdiff
2007-05-03
amwaterhouse
pdb id toUpperCase
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commitdiff
2007-05-03
amwaterhouse
optimize repaints
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commitdiff
2007-05-03
amwaterhouse
remove system.out
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commitdiff
2007-05-02
jprocter
feature locations are retrieved by associated accession...
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commitdiff
2007-05-02
jprocter
feature locations are retrieved by associated accession...
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commitdiff
2007-05-02
jprocter
public debug report log message to gather any cases...
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commitdiff
2007-05-02
jprocter
fixed getIntervals bug to ensure it returns range from...
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commitdiff
2007-05-02
jprocter
documentation and proxy call to util.MapList.getToWord...
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commitdiff
2007-05-02
jprocter
extractScores menu item disabled for release
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commitdiff
2007-05-02
jprocter
only return non-empty subsequences when getting selecti...
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commitdiff
2007-05-02
amwaterhouse
Allow expansion of textarea for many sequence input
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commitdiff
2007-05-02
amwaterhouse
AMSA input set padgaps true
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commitdiff
2007-05-02
amwaterhouse
convert space to gapchar
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commitdiff
2007-05-02
jprocter
undo stackempty error fix, refactored do and undo(...
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commitdiff
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
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commitdiff
2007-05-02
jprocter
copy only the sequence associated alignment annotation...
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commitdiff
2007-05-02
jprocter
subsequence bound checks and constructor for selectivel...
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commitdiff
2007-05-02
jprocter
return flag indicating if annotations were actually...
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commitdiff
2007-05-02
jprocter
checks for negative start column in restrict
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commitdiff
2007-05-02
amwaterhouse
Padgaps is false by default
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commitdiff
2007-05-01
amwaterhouse
setVisible flag sent to EditNameDialog
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commitdiff
2007-05-01
amwaterhouse
Pad gaps method
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commitdiff
2007-05-01
amwaterhouse
Make sure annots are alignment width
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commitdiff
2007-05-01
amwaterhouse
use jalviewLite to addFrame
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commitdiff
2007-05-01
amwaterhouse
remove system.out
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commitdiff
2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
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commitdiff
2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
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commitdiff
2007-05-01
jprocter
javadoc
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commitdiff
2007-05-01
jprocter
removeAlignmentAnnotation only removes annotation objec...
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commitdiff
2007-05-01
jprocter
sort-by-score works of sequence-annotation, not alignme...
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commitdiff
2007-05-01
amwaterhouse
Save seqset properties
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commitdiff
2007-04-30
jprocter
'no sources selected' calls method on feature settings...
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commitdiff
2007-04-30
jprocter
fixed deadlock
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commitdiff
2007-04-30
amwaterhouse
setVisible replaces show
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commitdiff
2007-04-30
jprocter
rebuild sort by scores menu when new annotation is...
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commitdiff
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