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introduce new type to pass around featureRendererSettings
[jalview.git]
/
src
/
jalview
/
2007-10-31
jprocter
introduce new type to pass around featureRendererSettings
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commitdiff
2007-10-31
jprocter
nullpointer bug fix on consensus thread
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commitdiff
2007-10-31
jprocter
javadoc on webservice discovery method
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commitdiff
2007-10-31
jprocter
fix parsing of embl entries like S75919 which have...
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commitdiff
2007-10-29
jprocter
bugfix for alignments without aligned codon frames
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commitdiff
2007-10-28
jprocter
begin process of allowing for column selection in wrapp...
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commitdiff
2007-10-28
jprocter
fix display of hidden sequence markers in applet
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commitdiff
2007-10-27
jprocter
must do any modification to menus before they are embed...
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commitdiff
2007-10-27
jprocter
enabled platform dependent embedding of menuBar with...
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commitdiff
2007-10-27
jprocter
windowclose handler now calls EmbmenuFrame garbage...
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commitdiff
2007-10-27
jprocter
fixed bootstrap value rendering to occur only when...
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commitdiff
2007-10-27
jprocter
refactored embedded menu machinery
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commitdiff
2007-10-26
jprocter
add mac dependent use of embedded menu bar rather than...
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commitdiff
2007-10-26
jprocter
use new utility class for platform info
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commitdiff
2007-10-26
jprocter
new applet and application utility class for platform...
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commitdiff
2007-10-26
jprocter
fixed applet API calls so they operate on the embedded...
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commitdiff
2007-10-26
jprocter
updated client which allows XML validation flags to...
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commitdiff
2007-10-24
jprocter
thread for product retrieval
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commitdiff
2007-10-24
jprocter
ensure PDB ids are updated on the dataset sequence
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commitdiff
2007-10-24
jprocter
individual query error/exception report and bugfix
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commitdiff
2007-10-24
jprocter
add parsed PDB reference to sequences
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commitdiff
2007-10-24
jprocter
null pointer exception and warning for update of tree
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commitdiff
2007-10-24
jprocter
javadoc
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commitdiff
2007-10-15
jprocter
new features or newly shown group features are placed...
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commitdiff
2007-10-12
jprocter
added separator parameter with default of '|' to contro...
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commitdiff
2007-10-11
jprocter
remove conflict on javascript api
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commitdiff
2007-10-11
jprocter
static debug flag controlling output of excessive info...
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commitdiff
2007-10-11
jprocter
pass up the errormessage in the exception when a dataso...
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commitdiff
2007-10-10
jprocter
featureGroup show/hide and newView methods for applet...
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commitdiff
2007-10-04
jprocter
selected region output also supports generation of...
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commitdiff
2007-10-04
jprocter
refactored list of file extensions and file format...
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commitdiff
2007-10-04
jprocter
edit label/displayChar contains existing character...
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commitdiff
2007-10-04
jprocter
refactored invertColumnSelection as an object method
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commitdiff
2007-10-02
jprocter
added colSel as a parameter formatAdaptor print functio...
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commitdiff
2007-10-02
jprocter
convenience constructor for duplicating an annotation...
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commitdiff
2007-10-02
jprocter
javadoc and operator for editing AlignmentAnnotation...
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commitdiff
2007-10-02
jprocter
javadoc
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commitdiff
2007-09-29
jprocter
always update PDBEntry list if DBRefEntries might have...
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commitdiff
2007-09-29
jprocter
updatePDBEntry method to add any PDBEntry from the...
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commitdiff
2007-09-29
jprocter
use pdb refsource string
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commitdiff
2007-09-29
jprocter
javadoc
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commitdiff
2007-09-29
jprocter
friendlier sequence names for protein products
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commitdiff
2007-09-28
jprocter
better support for TreeNode binding
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commitdiff
2007-09-28
jprocter
javadoc for jalview_properties tags
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commitdiff
2007-09-27
jprocter
modifiable lock check
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commitdiff
2007-09-25
jprocter
ascii file
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commitdiff
2007-09-25
jprocter
beginning of vamsas/local object synchronization patter...
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commitdiff
2007-09-25
jprocter
added store of undo/redo hash for each alignment so...
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commitdiff
2007-09-25
jprocter
primitive methods for getting current undo/redo state...
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commitdiff
2007-09-18
jprocter
fix class-cast exception and added beginnings of DBRef...
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commitdiff
2007-09-14
jprocter
added support for loading a vamsas document into a...
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commitdiff
2007-09-14
jprocter
better reproduction of compact newick files (removal...
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commitdiff
2007-09-10
jprocter
choose a particular vamsas session, load, or create...
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commitdiff
2007-09-10
jprocter
ensure dbrefs are added to dataset sequence.
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commitdiff
2007-09-07
jprocter
formatting and ensure that dataset is actually searched...
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commitdiff
2007-09-07
jprocter
added action for saving the current session as a vamsas...
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commitdiff
2007-09-07
jprocter
Maps are usually added to DbRefs which are added to...
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commitdiff
2007-09-07
jprocter
added a more general DBRef search interface
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commitdiff
2007-09-06
jprocter
bootstrap regex 'fixed' and ugly hack to try and get...
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commitdiff
2007-09-06
jprocter
args for emblfile parser main method
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commitdiff
2007-09-06
jprocter
fixes bootstrap bug noted by Chunlong Chen in email...
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commitdiff
2007-09-04
jprocter
basic fix for pfelkers problem with ':' in the last...
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commitdiff
2007-09-04
jprocter
gff parsing when no start or end position is defined.
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commitdiff
2007-08-31
jprocter
added CSV export of annotation rows to application.
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commitdiff
2007-08-30
jprocter
*really* make sure database references are stored and...
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commitdiff
2007-08-30
jprocter
ensure codon mappings and database references are merge...
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commitdiff
2007-08-30
jprocter
sequenceMappings go on boh datasets involved in a mappi...
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commitdiff
2007-08-30
jprocter
refactored and ensured alCodonMappings are propagated...
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commitdiff
2007-08-30
jprocter
store dataset references, sequence dataset ids, and...
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commitdiff
2007-08-30
jprocter
improved vamsas treenode node binding support
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commitdiff
2007-08-30
jprocter
moved dataset sequence creation onto sequence method
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commitdiff
2007-08-30
jprocter
create dataset sequence method
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commitdiff
2007-08-30
jprocter
removed autogenerated todo
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commitdiff
2007-08-30
jprocter
added aligned codon frames, and dataset reference ids...
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commitdiff
2007-08-24
jprocter
dataset alignments have a reference count which must...
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commitdiff
2007-08-24
jprocter
remove null pointer exception when embl file is not...
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commitdiff
2007-08-24
jprocter
todo comments
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commitdiff
2007-08-23
jprocter
proper vamsas style binding of alignment sequence objec...
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commitdiff
2007-08-22
jprocter
popup for non-fatal tree parsing error
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commitdiff
2007-08-22
jprocter
quick fix for exceptions due to invalid embl refs
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commitdiff
2007-08-22
jprocter
fix serious repetitive exceptions if user closes colour...
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commitdiff
2007-08-22
jprocter
catch occasional -ve imgWidth exception
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commitdiff
2007-08-22
jprocter
added failsafe fix for cases where null sequence names...
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commitdiff
2007-08-22
jprocter
introduce beginning of bug fix for parsing atv style...
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commitdiff
2007-08-22
jprocter
added facility for sending non-fatal warnings back...
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commitdiff
2007-08-13
jprocter
fixed typo in new 2_3 startup file default value
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commitdiff
2007-08-08
jprocter
generalise name of prediction method
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commitdiff
2007-08-08
jprocter
histidine should be midblue (noticed by Peter Knight...
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commitdiff
2007-08-06
jprocter
comment concerning null exceptions generated when annot...
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commitdiff
2007-08-06
jprocter
null pointer exception blocked redraw of annotation...
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commitdiff
2007-08-02
jprocter
javadoc and bugfix for 'save' when jalview is default...
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commitdiff
2007-08-01
jprocter
added the '-tree' parameter to open a tree from the...
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commitdiff
2007-08-01
jprocter
javadoc
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commitdiff
2007-08-01
jprocter
ensure current dataset reference is passed to the cross...
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commitdiff
2007-08-01
jprocter
added tree as an applet to application servlet parameter
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commitdiff
2007-08-01
jprocter
null pointer exception bug fix
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commitdiff
2007-07-31
jprocter
debugging cross references and duplicate sequence db...
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commitdiff
2007-07-30
jprocter
test cc change revoked.
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commitdiff
2007-07-30
jprocter
test cc
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commitdiff
2007-07-30
jprocter
javadoc
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commitdiff
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