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made serializable
[vamsas.git]
/
src
/
uk
/
ac
/
vamsas
/
2007-09-04
jprocter
made serializable
tree
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commitdiff
2007-08-31
jprocter
formatting
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commitdiff
2007-08-31
jprocter
refactoring to enable initialisation of session from...
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commitdiff
2007-08-31
jprocter
bugfix for new appdata writes not overwriting existing...
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commitdiff
2007-08-31
jprocter
flags for reading/writing client or user appdata only.
tree
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commitdiff
2007-08-31
jprocter
added newSession methods to create a new vamsas session...
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commitdiff
2007-08-28
jprocter
last core object source generation on...
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commitdiff
2007-08-28
jprocter
notional testing of client and user app data read and...
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commitdiff
2007-08-28
jprocter
more rar friendly appdata reference name and uniqueness...
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commitdiff
2007-08-22
jprocter
Removed clientfile watcher elements in attempt to remov...
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commitdiff
2007-08-22
jprocter
attempts to remove any locks after client is finalized
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commitdiff
2007-08-22
jprocter
fixed regex and made 'improper' support for parsing...
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commitdiff
2007-08-22
jprocter
better 'main' test and support creation of treenodes...
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commitdiff
2007-08-21
jprocter
beginning of 'simple' interface for newick string based...
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commitdiff
2007-08-21
jprocter
refactored and new methods for making and processing...
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commitdiff
2007-08-21
jprocter
refactored from newickfile
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commitdiff
2007-08-21
jprocter
newickfile class moved into its own package ready for...
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commitdiff
2007-08-21
jprocter
new marshaller instance ensures we use marshalling...
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commitdiff
2007-08-17
jprocter
formatting changes
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commitdiff
2007-08-17
jprocter
safety checks and informational Errors generated when...
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commitdiff
2007-08-17
jprocter
TODO comments
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commitdiff
2007-08-17
jprocter
new method to test if a particular file is or is relate...
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commitdiff
2007-08-17
jprocter
portability issue error messages
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commitdiff
2007-08-17
jprocter
fixed update of existing appdata jar entry bug (raised...
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commitdiff
2007-08-16
jprocter
refactored IClientAppdata and implementation has been...
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commitdiff
2007-08-16
jprocter
refactored AppData stream classes so they are returned...
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commitdiff
2007-07-30
jprocter
null pointer exception on attempt to release lock expli...
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commitdiff
2007-07-15
jprocter
vorbaId generator constructs valid ID strings (NCNames)
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commitdiff
2007-06-29
jprocter
0 to unbounded Dataset/Sequence/DbRef/Map elements...
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commitdiff
2007-06-28
jprocter
logic for debug message (if either or both mapped eleme...
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commitdiff
2007-06-28
jprocter
debug message for default mapping
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commitdiff
2007-06-28
jprocter
added mapType utilities.
tree
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commitdiff
2007-06-28
jprocter
imported utility classes for working with MapTypes...
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commitdiff
2007-06-28
jprocter
prototype of Newick string parsing code and node bindin...
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commitdiff
2007-06-28
jprocter
raise the DOCUMENT_REQUESTTOCLOSE event and debug output.
tree
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commitdiff
2007-06-28
jprocter
use the simpleClient's lockFactory for the client's...
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commitdiff
2007-06-28
jprocter
debugging on the haltWatch method
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commitdiff
2007-06-28
jprocter
use of config class
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commitdiff
2007-06-28
jprocter
beginnings of configuration settings class. Introduced...
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commitdiff
2007-06-28
jprocter
modified warning for unresolved IDRef during castor...
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commitdiff
2007-06-28
jprocter
added check for 'broken update' - where vamsas document...
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commitdiff
2007-06-28
jprocter
end position not correctly set.
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commitdiff
2007-06-28
jprocter
sequence mappings and DbRef mapping objects unified...
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commitdiff
2007-06-12
jprocter
fixed regex to remove all kinds of file separators...
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commitdiff
2007-06-12
pmarguerite
Added to mechanism to determine if a client closing...
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commitdiff
2007-05-22
jprocter
schema changes: provenance-entry-date is now an xmlSche...
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commitdiff
2007-05-21
jprocter
log validation errors which cause the 'mergeRoots'...
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commitdiff
2007-05-21
pmarguerite
VamsasSession: increased time before considering the...
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commitdiff
2007-05-21
jprocter
test cdoc object retrieve by VorbaId and add timeout...
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commitdiff
2007-05-21
jprocter
todo doc
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commitdiff
2007-05-21
jprocter
fix non-retrieval of vobject by vorba id on clientdoc...
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commitdiff
2007-05-18
pmarguerite
VamsasSession: fixed incorrectly stopping the EventGene...
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commitdiff
2007-05-18
pmarguerite
VamsasSession: insure the RemoveClientWatchCallBack...
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commitdiff
2007-05-18
pmarguerite
Added support for crashed client.
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commitdiff
2007-05-18
jprocter
better command line processing options (load, save...
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commitdiff
2007-05-18
jprocter
javadoc todo
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commitdiff
2007-05-18
jprocter
removed old Mapping object dependency
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commitdiff
2007-04-24
jprocter
castor-1.1 source generation
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commitdiff
2007-04-24
jprocter
Descriptors live in uk.ac.vamsas.objects.core.descripto...
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commitdiff
2007-04-24
jprocter
pick manager and simulation of alignment modification...
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commitdiff
2007-04-24
jprocter
part-implemented and *untested*
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commitdiff
2007-04-24
jprocter
introduced hashCode based object change detection that...
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commitdiff
2007-04-24
jprocter
attempt to fix occasional backupSessionFile exception.
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commitdiff
2007-04-24
jprocter
ambiguous import of 'Lock' removed.
tree
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commitdiff
2007-04-24
jprocter
incorrect update approach (attempt prior to hashCode...
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commitdiff
2007-04-24
jprocter
int to long type change in castor-1.1(v) objects
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commitdiff
2007-04-24
jprocter
rebult for castor-1.1(vamsas version)
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commitdiff
2007-03-20
jprocter
update detection mechanism based comparing the differen...
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commitdiff
2007-03-20
jprocter
pass maintained hash of Vobject hash values to IdFactor...
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commitdiff
2007-03-20
jprocter
commented out methods that might be used for accessing...
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commitdiff
2007-03-20
jprocter
javadoc
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commitdiff
2007-03-20
jprocter
new constructor to pass hash of Vobject hash values...
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commitdiff
2007-03-19
jprocter
trap exceptions during session events and ensure pick...
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commitdiff
2007-03-19
jprocter
debug log output
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commitdiff
2007-03-15
jprocter
switched picker shutdown to after finalize() call ...
tree
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commitdiff
2007-03-15
jprocter
WatcherElement reference should be nulled by caller...
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commitdiff
2007-03-15
jprocter
interrupt before wait sleep so haltWatchers is more...
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commitdiff
2007-03-15
jprocter
Messages are thrown away when passThru is false (rather...
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commitdiff
2007-03-15
jprocter
closing channel always releases lock (on windows anyhow)
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commitdiff
2007-03-15
jprocter
occasional null pointer exception
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commitdiff
2007-03-15
jprocter
ensured backups are only made when backup==true
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commitdiff
2007-03-15
jprocter
removed infinite loop on server shutdown
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commitdiff
2007-03-08
jprocter
more debug messages.
tree
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commitdiff
2007-03-08
jprocter
simplified and bugfixed occasional lock contention.
tree
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commitdiff
2007-03-08
jprocter
bugfixes for shutdown and null message reception.
tree
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commitdiff
2007-03-08
jprocter
utility functions for dealing with Range and Properties...
tree
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commitdiff
2007-03-08
jprocter
remove unnecessary existence checks.
tree
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commitdiff
2007-03-08
jprocter
remove unnecessary existence checks.
tree
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commitdiff
2007-03-07
imilne
Added shutdown() methods for the socket-based PickManag...
tree
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commitdiff
2007-03-06
jprocter
stub for the dom tree update event generator.
tree
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commitdiff
2007-03-06
jprocter
added PickManager test code. Current state of library...
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commitdiff
2007-03-06
jprocter
synchronized methods to ensure thread safety for underl...
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commitdiff
2007-02-27
jprocter
ensured single instance of vamsasarchive io handler...
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commitdiff
2007-02-12
jprocter
non-1.4 factory construtors removed.
tree
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commitdiff
2007-02-02
pmarguerite
Added generateClientUrn method to generate a urn from...
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commitdiff
2007-02-02
pmarguerite
Avoid creation of ClientHandle and UserHandle objects...
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commitdiff
2007-01-12
jprocter
SimpleClient implementation testable against uk.ac...
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commitdiff
2007-01-12
jprocter
fixed bug leaving copies of archive backups (no testcas...
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commitdiff
2007-01-12
jprocter
extended to test against SimpleClient implementation
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commitdiff
2007-01-12
jprocter
added TODO for testing getAppData method before migrati...
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commitdiff
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