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added legacy import of version 0.1 SessionLists
[vamsas.git]
/
src
/
uk
/
ac
/
2010-02-19
jprocter
added legacy import of version 0.1 SessionLists
master
Release_0.2
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commitdiff
2010-02-19
jprocter
formatting
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commitdiff
2010-02-19
jprocter
bugfix and new containment test method from jalview...
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commitdiff
2010-02-18
jprocter
verson 0.2 LGPL licensed source and jars
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commitdiff
2010-02-18
jprocter
SAXTreeViewer requires java 1.5 or later.
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commitdiff
2010-02-18
jprocter
vamsas API version 0.2 - allow new sessions or imported...
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commitdiff
2010-02-18
jprocter
flag for suppressing unresolved xmlId warnings
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commitdiff
2010-02-18
jprocter
suppress unresolved xmlId warnings for initial unmarsha...
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commitdiff
2010-02-18
jprocter
removed Appdata test TODO
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commitdiff
2010-02-18
jprocter
supress occasional null pointer exceptions (unverified...
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commitdiff
2010-02-18
jprocter
efficiency
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commitdiff
2010-02-18
jprocter
empty selection message not terminated with '\n'
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commitdiff
2009-06-08
jprocter
use simpleclientsession handle rather than bare session...
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commitdiff
2009-06-08
jprocter
locate first session or sessions for a given URN
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commitdiff
2009-06-08
jprocter
locate simpleclientsession handle for any session URN
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commitdiff
2009-06-08
jprocter
store simpleclientsession handle rather than bare sessi...
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commitdiff
2009-06-08
jprocter
displayed urn is either vamsasdocument reference or...
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commitdiff
2009-06-08
jprocter
new URN hold external session URI and internal referenc...
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commitdiff
2009-05-07
jprocter
applied LGPLv3 and source code formatting.
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commitdiff
2008-11-12
jprocter
new Selection message. This still needs work!
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commitdiff
2008-11-12
jprocter
added validation method to perform minimal check that...
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commitdiff
2008-11-12
jprocter
fix minor exception when syncing document with appdata...
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commitdiff
2008-11-12
jprocter
added more types and type validation method
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commitdiff
2007-11-05
jprocter
try to set sessionmodified flag if the client document...
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commitdiff
2007-11-05
jprocter
requesttoclose event is raised if session modified...
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commitdiff
2007-10-19
jprocter
made SimpleClientConfig externally configurable and...
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commitdiff
2007-09-27
jprocter
apache zip has no FileName method.
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commitdiff
2007-09-27
jprocter
hack to minimise IO interruption when SimpleClient...
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commitdiff
2007-09-27
jprocter
ultraparanoid zip entry safename function
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commitdiff
2007-09-27
jprocter
Switched to using pure java Apache Zip implementation
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commitdiff
2007-09-27
jprocter
made finalize check before zeroing self-references...
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commitdiff
2007-09-27
jprocter
Added test to ensure all bytes are transferred during...
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commitdiff
2007-09-24
jprocter
test for property type and property type constants
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commitdiff
2007-09-18
jprocter
really simple test for accessibility of a zip file...
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commitdiff
2007-09-18
jprocter
Java ZipFile code does not cope with entries with lots...
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commitdiff
2007-09-18
jprocter
added retry mechanism for opening of vamsas archives...
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commitdiff
2007-09-18
jprocter
note on occasional null pointer exceptions raised on...
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commitdiff
2007-09-18
jprocter
added two tests to ensure a vamsasArchive is readable...
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commitdiff
2007-09-14
jprocter
tidied command line interface (a bit) and implement...
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commitdiff
2007-09-14
jprocter
implement low level functions for initialising a new...
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commitdiff
2007-09-14
jprocter
moved methods for opening a stored session document...
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commitdiff
2007-09-14
jprocter
implement new client factory methods to open a stored...
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commitdiff
2007-09-14
jprocter
todo on importDocument (whether to exclude from interfa...
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commitdiff
2007-09-14
jprocter
added new client factory methods to open a stored sessi...
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commitdiff
2007-09-14
jprocter
set printRootInfo so root labels are not lost.
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commitdiff
2007-09-11
jprocter
un-necessary spaces for bootstrap separator in root...
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commitdiff
2007-09-11
jprocter
bootstrap value parsing/recovery only for nodes with...
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commitdiff
2007-09-11
jprocter
refactored initialisation of new session with existing...
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commitdiff
2007-09-11
jprocter
todo for importing stored session as a new session
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commitdiff
2007-09-11
jprocter
ensure that document updates only occur if the vamsas...
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commitdiff
2007-09-04
jprocter
made serializable
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commitdiff
2007-08-31
jprocter
formatting
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commitdiff
2007-08-31
jprocter
refactoring to enable initialisation of session from...
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commitdiff
2007-08-31
jprocter
bugfix for new appdata writes not overwriting existing...
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commitdiff
2007-08-31
jprocter
flags for reading/writing client or user appdata only.
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commitdiff
2007-08-31
jprocter
added newSession methods to create a new vamsas session...
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commitdiff
2007-08-28
jprocter
last core object source generation on...
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commitdiff
2007-08-28
jprocter
notional testing of client and user app data read and...
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commitdiff
2007-08-28
jprocter
more rar friendly appdata reference name and uniqueness...
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commitdiff
2007-08-22
jprocter
Removed clientfile watcher elements in attempt to remov...
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commitdiff
2007-08-22
jprocter
attempts to remove any locks after client is finalized
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commitdiff
2007-08-22
jprocter
fixed regex and made 'improper' support for parsing...
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commitdiff
2007-08-22
jprocter
better 'main' test and support creation of treenodes...
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commitdiff
2007-08-21
jprocter
beginning of 'simple' interface for newick string based...
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commitdiff
2007-08-21
jprocter
refactored and new methods for making and processing...
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commitdiff
2007-08-21
jprocter
refactored from newickfile
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commitdiff
2007-08-21
jprocter
newickfile class moved into its own package ready for...
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commitdiff
2007-08-21
jprocter
new marshaller instance ensures we use marshalling...
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commitdiff
2007-08-17
jprocter
formatting changes
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commitdiff
2007-08-17
jprocter
safety checks and informational Errors generated when...
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commitdiff
2007-08-17
jprocter
TODO comments
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commitdiff
2007-08-17
jprocter
new method to test if a particular file is or is relate...
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commitdiff
2007-08-17
jprocter
portability issue error messages
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commitdiff
2007-08-17
jprocter
fixed update of existing appdata jar entry bug (raised...
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commitdiff
2007-08-16
jprocter
refactored IClientAppdata and implementation has been...
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commitdiff
2007-08-16
jprocter
refactored AppData stream classes so they are returned...
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commitdiff
2007-07-30
jprocter
null pointer exception on attempt to release lock expli...
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commitdiff
2007-07-15
jprocter
vorbaId generator constructs valid ID strings (NCNames)
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commitdiff
2007-06-29
jprocter
0 to unbounded Dataset/Sequence/DbRef/Map elements...
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commitdiff
2007-06-28
jprocter
logic for debug message (if either or both mapped eleme...
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commitdiff
2007-06-28
jprocter
debug message for default mapping
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commitdiff
2007-06-28
jprocter
added mapType utilities.
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commitdiff
2007-06-28
jprocter
imported utility classes for working with MapTypes...
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commitdiff
2007-06-28
jprocter
prototype of Newick string parsing code and node bindin...
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commitdiff
2007-06-28
jprocter
raise the DOCUMENT_REQUESTTOCLOSE event and debug output.
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commitdiff
2007-06-28
jprocter
use the simpleClient's lockFactory for the client's...
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commitdiff
2007-06-28
jprocter
debugging on the haltWatch method
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commitdiff
2007-06-28
jprocter
use of config class
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commitdiff
2007-06-28
jprocter
beginnings of configuration settings class. Introduced...
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commitdiff
2007-06-28
jprocter
modified warning for unresolved IDRef during castor...
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commitdiff
2007-06-28
jprocter
added check for 'broken update' - where vamsas document...
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commitdiff
2007-06-28
jprocter
end position not correctly set.
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commitdiff
2007-06-28
jprocter
sequence mappings and DbRef mapping objects unified...
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commitdiff
2007-06-12
jprocter
fixed regex to remove all kinds of file separators...
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commitdiff
2007-06-12
pmarguerite
Added to mechanism to determine if a client closing...
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commitdiff
2007-05-22
jprocter
schema changes: provenance-entry-date is now an xmlSche...
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commitdiff
2007-05-21
jprocter
log validation errors which cause the 'mergeRoots'...
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commitdiff
2007-05-21
pmarguerite
VamsasSession: increased time before considering the...
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commitdiff
2007-05-21
jprocter
test cdoc object retrieve by VorbaId and add timeout...
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commitdiff
2007-05-21
jprocter
todo doc
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