git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Merge branch 'releases/Release_2_10_4_Branch' into develop
[jalview.git]
/
src
/
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 don’t create a mapping if sequence...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 only create a mapping entry or write...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 JAL-2780 include sequence start number when...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 null local siftsClient variable if exception...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor StructureSelectionManager.siftsClient...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 FIXME: value of sourceType parameter always...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor possibly non-functional ‘extract...
tree
|
commitdiff
2018-02-13
Jim Procter
JAL-2781 tidy up comments on getMapping/computeMapping
tree
|
commitdiff
2018-02-12
Jim Procter
JAL-2780 JAL-2781 ahem - add a semicolon if there isn...
tree
|
commitdiff
2018-02-11
Jim Procter
JAL-2781 use SIFTs mapping rather than maxChain AlignSe...
tree
|
commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 use PDBe numbering to map between...
tree
|
commitdiff
2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
tree
|
commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 include a Mapping object in Structure...
tree
|
commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 UNASSIGNED positions marked as Intege...
tree
|
commitdiff
2018-02-09
Jim Procter
Use the “PDBe” or “PDB” numbering (starts from 1, corre...
tree
|
commitdiff
2018-02-09
Jim Procter
JAL-2780 JAL-2781 should always ensure SIFTS mappings...
tree
|
commitdiff
2018-02-07
Jim Procter
JAL-2902 catch case where viewer is closed (therefore...
tree
|
commitdiff
2018-02-07
Jim Procter
JAL-2902 thread off dialog close op to avoid deadlock...
tree
|
commitdiff
2018-02-07
gmungoc
JAL-2808 ensure pattern field re-enabled when needed...
tree
|
commitdiff
2018-02-07
Jim Procter
JAL-2902 - isBusy and hasMapping methods so client...
tree
|
commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 fix javadoc in line with behaviour...
tree
|
commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to...
tree
|
commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 don’t assume contiguous mapping to...
tree
|
commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2781 programmatically select structures...
tree
|
commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2871 only look up current table view once
tree
|
commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2781 - patch and first test for AlignmentI...
tree
|
commitdiff
2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
tree
|
commitdiff
2018-02-05
gmungoc
Merge branch 'spikes/mungo' into trialMerge
tree
|
commitdiff
2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
tree
|
commitdiff
2018-02-02
gmungoc
JAL-984 merged to spikes-mungo
tree
|
commitdiff
2018-02-02
gmungoc
Merge branch 'feature/JAL-984splitAdjuster' into featur...
tree
|
commitdiff
2018-02-02
gmungoc
JAL-984 use cursor for drag regions to adjust annotatio...
tree
|
commitdiff
2018-02-02
gmungoc
JAL-984 better behaved panel height adjuster
tree
|
commitdiff
2018-01-31
gmungoc
JAL-2792 added tooltip to menu items in case of truncation
tree
|
commitdiff
2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
tree
|
commitdiff
2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressio...
tree
|
commitdiff
2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
|
commitdiff
2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
tree
|
commitdiff
2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
tree
|
commitdiff
2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
tree
|
commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
|
commitdiff
2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
tree
|
commitdiff
2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
tree
|
commitdiff
2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
tree
|
commitdiff
2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
tree
|
commitdiff
2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
tree
|
commitdiff
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 methods relocated
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
tree
|
commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
tree
|
commitdiff
2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 refactored to extract specific consequence...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 additional sub-terms of sequence_variant added
tree
|
commitdiff
2017-11-30
gmungoc
JAL-2850 improved use of htsjdk api to read contig...
tree
|
commitdiff
2017-11-30
gmungoc
JAL-1766 additional tests for stub htsjdk wrapper
tree
|
commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
|
commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
|
commitdiff
2017-11-28
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-11-28
gmungoc
JAL-2850 MapList.isToForwardStrand added
tree
|
commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
tree
|
commitdiff
2017-11-27
gmungoc
JAL-2850 VCFLoader refactored to load VCF to contig...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 update spike to latest
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 refactoring to better handler filter by Score...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 relocate constants for compiler, add COLUMN_CO...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 don't cache i18n - MessageManager already...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range, Present...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 removed field filters; sort CSQ data by key
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 added conditions Present, NotPresent as options
tree
|
commitdiff
2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
tree
|
commitdiff
2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 refactor conversion of table data to beans...
tree
|
commitdiff
2017-11-23
gmungoc
JAL-2808 pass FeatureSettings to controller as array...
tree
|
commitdiff
next