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JAL-1681 ensure cDNA consensus computed on startup (project/applet)
[jalview.git]
/
src
/
2015-03-31
gmungoc
JAL-1681 ensure cDNA consensus computed on startup...
tree
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commitdiff
2015-03-31
gmungoc
JAL-1264 reinstated 'show annotations' menu item (and...
tree
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commitdiff
2015-03-30
gmungoc
JAL-1264 fix broken applet build dependencies
tree
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commitdiff
2015-03-25
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-03-25
gmungoc
JAL-1264 adding show/hide annotation options to applet
tree
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commitdiff
2015-03-25
tcofoegbu
Merge branch 'features/JAL-1667_PDBe_Search_API' into...
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1667 clean up commented codes in PopupMenu.java...
tree
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commitdiff
2015-03-25
tcofoegbu
Merge commit
tree
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commitdiff
2015-03-25
tcofoegbu
JAL-1668 Tab for summary config, auto refresh after...
tree
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commitdiff
2015-03-23
gmungoc
JAL-1681 (import reorder only)
tree
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commitdiff
2015-03-23
gmungoc
JAL-845 restore SplitFrame size from project; enable...
tree
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commitdiff
2015-03-23
gmungoc
StringBuffer --> StringBuilder
tree
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commitdiff
2015-03-23
gmungoc
Merge branch 'features/sequenceFeatureRefactor' into...
tree
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commitdiff
2015-03-19
tcofoegbu
JAL-1668 finally clean up
tree
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commitdiff
2015-03-19
gmungoc
JAL-845 fix bug in 3-to-1 scaling of protein from cDNA
tree
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commitdiff
2015-03-18
gmungoc
JAL-1680 small tidy
tree
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commitdiff
2015-03-18
gmungoc
JAL-845 adjust both sides of split frame when changing...
tree
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commitdiff
2015-03-18
gmungoc
JAL-1675 Chimera highlight side-chain; timeout added...
tree
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commitdiff
2015-03-18
gmungoc
Merge hack/JAL-1617 fake DBRef to develop
tree
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commitdiff
2015-03-18
gmungoc
JAL-845 map 'STOP' codons correctly
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 house keeping
tree
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commitdiff
2015-03-18
Charles Ofoegbu
JAL-1668 added PDBDocFieldPreference for configuring...
tree
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commitdiff
2015-03-17
gmungoc
JAL-1687 ignore case when determining if sequence match...
tree
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commitdiff
2015-03-17
gmungoc
JAL-845 ensure cDNA consensus scales with font size
tree
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commitdiff
2015-03-17
gmungoc
JAL-845 provide a moveable divider for SplitFrame ...
tree
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commitdiff
2015-03-16
gmungoc
JAL-845 tweaks and bug fixes for split frame view
tree
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commitdiff
2015-03-16
Charles Ofoegbu
JAL-1668 added validation for manual entry of pdb struc...
tree
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commitdiff
2015-03-15
Charles Ofoegbu
JAL-1667 updated test and internationalization messages
tree
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commitdiff
2015-03-13
gmungoc
JAL-845 refinements + tests for making mappings between...
tree
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commitdiff
2015-03-13
gmungoc
JAL-1686 @Override and/or TODO added to equals(Object...
tree
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commitdiff
2015-03-13
gmungoc
JAL-1684 allow X in protein to map to untranslatable...
tree
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commitdiff
2015-03-13
gmungoc
JAL-1685 fixed
tree
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commitdiff
2015-03-12
gmungoc
JAL-1544 sequece now sequence
tree
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commitdiff
2015-03-11
gmungoc
JAL-1684 better window size parameters; match up sequen...
tree
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commitdiff
2015-03-11
gmungoc
JAL-1684 fix bug in AlignmentView constructor
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 start cDNA consensus on 'add alignment' (as...
tree
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commitdiff
2015-03-11
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 smarter test for 'mappability' when adding...
tree
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commitdiff
2015-03-11
gmungoc
JAL-1421 changed Vector to List<String> for protein...
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 cDNA mapping: select on sequence translation...
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 handle no profile without NPE!
tree
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commitdiff
2015-03-10
gmungoc
JAL-1680 group consensus speeded up with a different...
tree
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commitdiff
2015-03-10
gmungoc
JAL-1681 show cDNA consensus on protein alignment ...
tree
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commitdiff
2015-03-09
Jim Procter
Merge branch 'features/JAL-1565_jpred4' into develop
tree
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commitdiff
2015-03-09
Jim Procter
JAL-1565 loading a concise file causes insertions to...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1668 added filtering and sorting capabilites
tree
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commitdiff
2015-03-06
Jim Procter
Merge branch 'develop' into features/JAL-845splitPaneMe...
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
reassign features already created/documented for 2...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-06
Charles Ofoegbu
JAL-1667 refactoring to support JAL-1668
tree
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commitdiff
2015-03-05
gmungoc
Merge branch 'develop' into features/JAL-845splitPaneMe...
tree
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commitdiff
2015-03-05
gmungoc
JAL-845 minor tidy / tests / javadoc tweaks
tree
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commitdiff
2015-03-04
Charles Ofoegbu
JAL-1668 First version JAL-1668
tree
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commitdiff
2015-03-04
gmungoc
JAL-845 bug fixes correcting linked editing
tree
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commitdiff
2015-03-03
gmungoc
JAL-845 refactor / typo fix
tree
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commitdiff
2015-03-03
gmungoc
JAL-845 implement alignment of protein to match cDNA...
tree
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commitdiff
2015-03-03
gmungoc
JAL-1452 nucleotide/protein default colour; JAL-845...
tree
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commitdiff
2015-03-02
Charles Ofoegbu
house keeping
tree
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commitdiff
2015-02-27
Jim Procter
JAL-1678 - patch to make sure we only compare positions...
tree
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commitdiff
2015-02-27
Jim Procter
fix for JAL-1678
tree
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commitdiff
2015-02-27
gmungoc
JAL-1452 distinct colour preferences for nucleotide...
tree
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commitdiff
2015-02-27
gmungoc
JAL-845 SplitFrame for "show product" and after alignin...
tree
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commitdiff
2015-02-26
Charles Ofoegbu
JAL-1667 PDBe Search Interface implementation
tree
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commitdiff
2015-02-25
gmungoc
JAL-1677 commenting use of AlignViewport.gatherViewsHere
tree
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commitdiff
2015-02-24
gmungoc
JAL-1677 Castor source changes
tree
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commitdiff
2015-02-24
gmungoc
JAL-845 set top and bottom seq id widths the same
tree
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commitdiff
2015-02-24
gmungoc
JAL-1677 save/restore SplitFrame to Jalview project
tree
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commitdiff
2015-02-23
gmungoc
JAL-845 repaint of complementary selection (applet)
tree
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commitdiff
2015-02-23
gmungoc
JAL-1619 split frame now offered in applet 'input from...
tree
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commitdiff
2015-02-20
gmungoc
JAL-1673 additional test (and trim of PDB resnum value)
tree
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commitdiff
2015-02-20
gmungoc
JAL-1675 correct highlighting in Chimera for mouseover...
tree
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commitdiff
2015-02-20
gmungoc
JAL-1665 create dataset sequences in applet
tree
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commitdiff
2015-02-20
gmungoc
JAL-1674 update both status bars when mousing over...
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-19
gmungoc
JAL-845 applet colour by tree; translate as cDNA; pull...
tree
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commitdiff
2015-02-13
gmungoc
JAL-845 first rough applet SplitFrame (add parameter...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 pass the columnselection rather then selected...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 cloned method and tested equivalence for using...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 switch to lists in SequenceGroup
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 typecast
tree
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commitdiff
2015-02-12
Jim Procter
javadoc
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 List rather than vector for sequence groups...
tree
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commitdiff
2015-02-12
gmungoc
JAL-1633 set file format on 'translate cDNA'
tree
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commitdiff
2015-02-12
gmungoc
Merge remote-tracking branch 'origin/merge/JAL-845_JAL...
tree
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commitdiff
2015-02-11
gmungoc
JAL-845 handling eXpand/Gather split frame views
tree
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commitdiff
2015-02-11
Jim Procter
JAL-1655 JAL-845 special support to set column width...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-845 avoid OOBException when method is called with...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-969 use AlignViewportI interface instance where...
tree
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commitdiff
2015-02-11
Jim Procter
JAL-1654 allow font to be specified without modifying...
tree
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commitdiff
2015-02-10
Jim Procter
note about preserving/reinstating custom grid geometry...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1640 make font-size changes modify grid size again
tree
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commitdiff
2015-02-10
Jim Procter
JAL-845 - portability patch - workaround for lastToken...
tree
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commitdiff
2015-02-10
Jim Procter
added comment to @gmungoc todo about referencing PDB...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-845 @mungoc TODO comments - addAlignment needs...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1382 slightly more efficient detection of non-gap...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-1382 @mungo TODO done: use StringUtils for delete...
tree
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commitdiff
2015-02-10
Jim Procter
JAL-966 @mungo TODO complete: List rather than bare...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'features/JAL-845splitPaneMergeDevelop...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'develop' into JAL-1640_stylesettings
tree
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commitdiff
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