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JAL-2489 JAL-2371 reinstate calls to
[jalview.git]
/
src
/
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 consensus calculation doesn’t depend on occupa...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 only create and add occupancy row to alignment...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fix: updated behaviour for SequenceGroup.findA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fixed behaviour for null parameters in line...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 desktop: filter/select columns by threshold...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 JAL-2432 code tidy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 left justify value shown after adjusting thres...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 JAL-2432 percentile filter for select/hide...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 shade occupancy from light grey to black for...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 don’t show symbol counts under histogram ...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 occupancy row has a space below it for counts
tree
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commitdiff
2017-04-25
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-25
tcofoegbu
JAL-2489 bug fix
tree
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commitdiff
2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fixed opposite out-by-one problem in wrapped...
tree
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commitdiff
2017-04-24
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fix to hidden column marker being one row...
tree
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commitdiff
2017-04-21
tcofoegbu
JAL-2485 Bug fix to filter out uniprot response header...
tree
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commitdiff
2017-04-19
tcofoegbu
JAL-2482 added null check
tree
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commitdiff
2017-04-18
tcofoegbu
JAL-2482 Bugfix
tree
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commitdiff
2017-04-10
tcofoegbu
Merge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
tree
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commitdiff
2017-04-10
tcofoegbu
JAL-2255 Bug fix
bug/JAL-2255_seq-fetcher-broken-on-linux
tree
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commitdiff
2017-04-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2255_seq-fetcher...
tree
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commitdiff
2017-04-10
gmungoc
JAL-2361 option to save on OK of changed named colour...
tree
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commitdiff
2017-04-06
gmungoc
JAL-2361 make a modified saved scheme the backout check...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2384 JAL-2371 update ResidueShader on change of...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 simplify constructors, select unsaved but...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 apply any saved changes to current colour...
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into bug/JAL-2314
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into bug/JAL-2461
bug/JAL-2461
tree
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commitdiff
2017-03-31
gmungoc
JAL-2405 additional checks for circular reference in...
tree
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commitdiff
2017-03-31
gmungoc
Merge branch 'develop' into bug/JAL-2431splitFrameNewView
bug/JAL-2431splitFrameNewView
tree
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commitdiff
2017-03-31
gmungoc
JAL-2430 code tidy, unit test for Jmol hidden column...
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-1608createGroups
bug/JAL-1608createGroups
tree
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commitdiff
2017-03-30
gmungoc
JAL-1608 leave Create Group, Remove Group menu items...
tree
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commitdiff
2017-03-30
gmungoc
JAL-2401 code and help tidy for review comments
tree
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commitdiff
2017-03-30
gmungoc
JAL-2401 don't apply lower case colour to upper case
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-2399textColour
bug/JAL-2399textColour
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-2346annotationChoice
tree
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commitdiff
2017-03-29
gmungoc
Merge branch 'develop' into bug/JAL-1608createGroups
tree
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commitdiff
2017-03-24
Jim Procter
JAL-2360 fix applet build by separating castor XML...
tree
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commitdiff
2017-03-24
kiramt
JAL-2314 Tidy up
tree
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commitdiff
2017-03-24
gmungoc
JAL-2464 fix cancel tree print behaviour
tree
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commitdiff
2017-03-23
kiramt
JAL-2314 Tweaks to stop thread sync issues
tree
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commitdiff
2017-03-23
gmungoc
JAL-2464 fix cancel tree print behaviour
tree
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commitdiff
2017-03-23
kiramt
JAL-2314 Tidies
tree
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commitdiff
2017-03-22
kiramt
JAL-2461 Removed DAS error stack trace, updated message
tree
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commitdiff
2017-03-22
kiramt
JAL-2388 Reinstated original overview checks for annota...
tree
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commitdiff
2017-03-22
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-03-21
gmungoc
JAL-2438 removed (non-functional) lastSeq, lastSequence...
tree
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commitdiff
2017-03-21
gmungoc
JAL-2243 update discovered features on opening structur...
tree
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commitdiff
2017-03-21
gmungoc
JAL-2438 check for null FeatureRenderer
tree
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commitdiff
2017-03-21
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
tree
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commitdiff
2017-03-20
Jim Procter
Merge branch 'bug/JAL-2421overviewboxflicker' into...
tree
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commitdiff
2017-03-20
kiramt
JAL-2388 Comment typo
tree
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commitdiff
2017-03-17
kiramt
JAL-2437 Synchronization corrections and unit tests
tree
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commitdiff
2017-03-17
kiramt
JAL-2388 Renamed column and row subtraction functions
tree
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commitdiff
2017-03-16
Jim Procter
Merge branch 'merges/develop_JAL2295setChimeraAttribute...
tree
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commitdiff
2017-03-16
Jim Procter
JAL-1933 refactor parameter for code clarity
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Renamed viewport position props to viewport...
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Applet update for overview panel
tree
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commitdiff
2017-03-16
kiramt
JAL-2439 Out-by-one in setting endRes/endSeq
tree
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commitdiff
2017-03-15
gmungoc
JAL-2431 show cDNA consensus after New View in split...
tree
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commitdiff
2017-03-15
kiramt
JAL-2388 Unit tests and tidies
tree
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commitdiff
2017-03-15
gmungoc
JAL-2443 push getResidueBoxColour inside getResidueColour
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 corrected getFeatureRenderer()
tree
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commitdiff
2017-03-15
gmungoc
JAL-2442 applet feature transparency also on overview...
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 handle null FeatureRenderer in FeatureColourFinder
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 refactored checks for 'no features displayed'
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 clarify code and javadoc, reinstate updateFeat...
tree
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commitdiff
2017-03-15
gmungoc
Merge branch 'develop' into bug/JAL-2436featureRenderer...
tree
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commitdiff
2017-03-14
kiramt
JAL-2388 Working overview panel
tree
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commitdiff
2017-03-14
kiramt
JAL-2439 Fixes to out-by-one sequence indexing in gui...
tree
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commitdiff
2017-03-14
kiramt
JAL-2388 New hidden cols/seqs functions to support...
tree
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commitdiff
2017-03-14
gmungoc
JAL-2438 unit test, fixes, Javadoc updates
tree
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commitdiff
2017-03-14
gmungoc
JAL-2438 Javadoc updates
tree
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commitdiff
2017-03-14
gmungoc
JAL-2438 comment/Javadoc tidies
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 corrected handling of default colour
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-03-10
kiramt
JAL-2437 Fixed reordering of sequences when hiding...
tree
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commitdiff
2017-03-10
kiramt
JAL-2388 Moving some alignment panel logic into overvie...
tree
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commitdiff
2017-03-09
kiramt
JAL-2426 Checks on conservation thread in case we are...
tree
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commitdiff
2017-03-09
kiramt
JAL-2426 Removal of NPE in conservation thread when...
tree
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commitdiff
2017-03-09
kiramt
JAL-2388 Minor fix for annotation graph, removed unit...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2295 avoid quotes breaking attribute value parsing
tree
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commitdiff
2017-03-07
kiramt
JAL-2388 Fixed inherited&new out-by-one errors; further...
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2017-03-07
kiramt
JAL-2388 Additional unit tests
tree
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commitdiff
2017-03-07
kiramt
JAL-2388 Missed commit
tree
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commitdiff
2017-03-07
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-03-07
kiramt
JAL-2429 findColumnPosition returns 0 for cols in regio...
tree
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commitdiff
2017-03-07
kiramt
JAL-2429 Additional fix to ColumnSelection when hidden...
tree
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commitdiff
2017-03-06
kiramt
JAL-2388 Dependency tidy
tree
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commitdiff
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