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JAL-2847 small things, filled in actionperformeds
[jalview.git]
/
src
/
2017-11-22
kjvdheide
JAL-2847 small things, filled in actionperformeds
tree
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commitdiff
2017-11-22
kjvdheide
JAL-2799 fixed selections not carrying over to tabs...
tree
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commitdiff
2017-11-21
kjvdheide
JAL-2847 added database menu items and listeners
tree
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commitdiff
2017-11-21
kjvdheide
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-11-21
kjvdheide
JAL-281 added string label for loading from database
tree
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commitdiff
2017-11-20
kjvdheide
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-11-20
kjvdheide
JAL-2799 JAL-2805 JAL-281 multiple trees can now be...
tree
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commitdiff
2017-11-20
kjvdheide
JAL-281 added history box to tree url input window
tree
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commitdiff
2017-11-20
kjvdheide
JAL-281 option pane with error handling for selecting...
tree
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commitdiff
2017-11-17
kjvdheide
JAL-2805 code refactor (actionPerformed cleaned up...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
kjvdheide
JAL-2805 reorganized code, tree building goes through...
tree
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commitdiff
2017-11-17
kjvdheide
JAL-2795 removed unneeded distancematrix length/width...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
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commitdiff
2017-11-17
kjvdheide
Merge branch 'kjvdh/features/PhylogenyViewer' of
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
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commitdiff
2017-11-17
kjvdheide
JAL-2805 couple of method name changes
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
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commitdiff
2017-11-17
kjvdheide
JAL-281 added menu items and listeners to load from...
tree
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commitdiff
2017-11-17
kjvdheide
JAL-281 changed load associated tree GUI item to menu...
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
tree
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commitdiff
2017-11-16
kjvdheide
JAL-2805 expanded tree and treenode interfaces
tree
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commitdiff
2017-11-16
kjvdheide
JAL-2805 loads of file reorganizing, interfaces expanded
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 Don't show cursor if position in hidden region
tree
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commitdiff
2017-11-15
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-15
kiramt
JAL-2811 Updated following review
bug/JAL-2811
tree
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commitdiff
2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
tree
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commitdiff
2017-11-15
kiramt
JAL-2834 JAL-2836 temporarily disabled wrapped mode...
tree
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commitdiff
2017-11-15
kjvdheide
JAL-2805 functional binding on loading associated trees
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 ported to applet
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidies and tests
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 viewport is passed along to the tree parser
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2795 added duplication check when calculated nodes...
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 added getters for hashmaps filled with associa...
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 added static method for logging duplications...
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 more sensible interface method params
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidy
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 finished up interface comments
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 re-enabled one2many checks
tree
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commitdiff
2017-11-14
kjvdheide
JAL-2805 interface comments, progress on associating...
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Changed to overlay on via graphics context...
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Missed commit
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Made it work for hidden columns/seqs too
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'imp/JAL-2774' into bug/JAL-2831
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 interface comments
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 some more name changes
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more name changes for clarity
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more interface name changing
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 name changed of interfaces for consistency
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 Jalview sequence binding interface expanded
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 TreeParser now interface based
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Tidy
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 Added tree building interface
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 name change
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 deleted old Aptx class for loading just Newick...
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more interface work
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2794 removed unused interface
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 undid accidental double (buggy) binding, more...
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'features/JAL-2758_shorteruniprot' into...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 typo
tree
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commitdiff
2017-11-13
kiramt
JAl-2811 Working for wrapped panels too
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Add layer for cursor in SeqCanvas
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 warning messages added if Forester detects...
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'imp/JAL-2810_ftsIDtab' into develop
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 First try at loading tree through Forester...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-13
kiramt
JAL-2784 new checks for gg==null
bug/JAL-2784
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 auto search checkbox state stored as user...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2679 example accession changed to CAD01290
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 mainFramTabs -> tabs
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 allow CalcId to match on String equivalence...
doc/JAL-2494_JAL-2828_mergefindAnnotation
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 refactored duplicate code for searching lists...
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 reorganized node select code, added subtree...
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 comments comments comments
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 most method parameters/class variables made...
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commitdiff
2017-11-10
kjvdheide
JAL-2794 comments, selected node now doesn't have to...
tree
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commitdiff
2017-11-09
kjvdheide
JAL-2794 PaintRefresher support, Aptx node selection...
tree
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commitdiff
2017-11-09
kjvdheide
JAL-2794 interface comment
tree
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commitdiff
2017-11-09
kjvdheide
JAL-2794 Made HashMap with Nodes as keys and sequences...
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Aptx instances get their parent alignment...
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Cleaning up tree conversion, sequences are...
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2795 created static class for forester conversions
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Interface name change (oops)
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 made JalviewTreeViewerBinding an interface
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Added getter for AlignmentViewport to TreeBuilder
tree
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commitdiff
2017-11-08
Jim Procter
Merge branch 'develop' into bug/JAL-2225mapMultipleChains
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commitdiff
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