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Too many calls to paintAlignment
[jalview.git]
/
src
/
2007-04-16
amwaterhouse
Too many calls to paintAlignment
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commitdiff
2007-04-13
amwaterhouse
FeatureRenderer takes alignmentPanel
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commitdiff
2007-04-13
amwaterhouse
Check alignment has same sequence
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commitdiff
2007-04-12
jprocter
basic support for multi-exon CDS features
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commitdiff
2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
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commitdiff
2007-04-11
amwaterhouse
SetTargetColour before dialog.show
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commitdiff
2007-04-11
jprocter
fixed for display of 'null' group features
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commitdiff
2007-04-11
jprocter
fixed base lookup bug in dna pairwise alignment and...
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commitdiff
2007-04-11
amwaterhouse
Can add features with no group
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commitdiff
2007-04-11
amwaterhouse
Adjustment for hidden columns
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commitdiff
2007-04-11
amwaterhouse
Use same mouse events as scalePanel
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commitdiff
2007-04-11
amwaterhouse
Amend features/annotations in applet
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commitdiff
2007-04-11
amwaterhouse
Used several places
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commitdiff
2007-04-11
amwaterhouse
If hiddenColumns are null, then column is viisble
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commitdiff
2007-04-11
amwaterhouse
featureAdded not in applet
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commitdiff
2007-04-05
amwaterhouse
Paste menu item dispalyed on right click. Memory settin...
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commitdiff
2007-04-05
amwaterhouse
Pasted file doesnt have title and not reloadable
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commitdiff
2007-04-05
amwaterhouse
call getAllframes on desktop instance
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commitdiff
2007-04-04
amwaterhouse
newFEatures flag for seq type
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commitdiff
2007-04-04
amwaterhouse
Use newFeatures flag
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commitdiff
2007-04-04
amwaterhouse
combobox for overlapping features
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commitdiff
2007-04-04
amwaterhouse
paintALignment
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commitdiff
2007-04-04
amwaterhouse
flag for dasCoordSysFound added
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commitdiff
2007-04-04
amwaterhouse
Throw exception if pdb result size is zero
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commitdiff
2007-04-02
jprocter
doco change.
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commitdiff
2007-04-02
jprocter
update settings for new groups (always displayed) and...
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commitdiff
2007-04-02
jprocter
bugfix + create/amend whilst feature panel open (still...
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commitdiff
2007-04-02
jprocter
typo fix.
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commitdiff
2007-04-02
amwaterhouse
Allow for scroll bar height
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commitdiff
2007-04-02
jprocter
featuresAdded method introduced for consistency with...
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commitdiff
2007-04-02
jprocter
fr==null check.
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commitdiff
2007-04-02
jprocter
feature group state and type order preference storage...
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commitdiff
2007-04-02
jprocter
featuresAdded call for transferred PDB features
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commitdiff
2007-04-02
jprocter
featuresAdded() method, state change support between...
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commitdiff
2007-04-02
jprocter
added feature type order preference attribute and visib...
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commitdiff
2007-04-02
amwaterhouse
New seq feature name not added here
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commitdiff
2007-04-02
amwaterhouse
getAllFeaturesAtRes replace by findFeaturesAtRes
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commitdiff
2007-04-02
amwaterhouse
addElement
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commitdiff
2007-04-02
amwaterhouse
destroy destroyed
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commitdiff
2007-04-02
amwaterhouse
destroy destroyed
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commitdiff
2007-04-02
amwaterhouse
Destroy alignment moved to finalize
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commitdiff
2007-04-02
amwaterhouse
Chain might be null
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commitdiff
2007-04-02
amwaterhouse
Destroy Alignment when closing frame
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commitdiff
2007-04-02
amwaterhouse
Destroy aligment method added
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commitdiff
2007-04-02
amwaterhouse
Must allow for scrollbar height
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commitdiff
2007-03-27
amwaterhouse
Pick atom highlighted
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commitdiff
2007-03-27
amwaterhouse
Updated PDB loading params
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commitdiff
2007-03-26
amwaterhouse
Jmol calls user colours
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commitdiff
2007-03-26
amwaterhouse
Jalview colour schemes added
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commitdiff
2007-03-26
amwaterhouse
Add seq mapping for multiple seq 2 pdbs
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commitdiff
2007-03-26
amwaterhouse
Menu changes
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commitdiff
2007-03-26
jprocter
fix single sequence features added rendering bug.
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commitdiff
2007-03-26
jprocter
PDB residue numberings transfered and alignment view...
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commitdiff
2007-03-26
jprocter
grammar.
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commitdiff
2007-03-23
amwaterhouse
updates to console
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commitdiff
2007-03-23
amwaterhouse
slide is transparent to hidden columns
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commitdiff
2007-03-23
jprocter
generalised feature attribute parsing slightly (no...
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commitdiff
2007-03-23
jprocter
bugfix for 1.1 conversion.
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commitdiff
2007-03-23
jprocter
reenable canceldas after a cancel and subsequence fetch
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commitdiff
2007-03-23
jprocter
lastSeq==null to force refresh of sequencefeature array...
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commitdiff
2007-03-23
jprocter
removed Iterator usage.
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commitdiff
2007-03-23
amwaterhouse
run and halt buttons must have listeners added
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commitdiff
2007-03-23
amwaterhouse
loadingFromArchive flag added
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commitdiff
2007-03-23
amwaterhouse
run halt hidden, help moved to menu item for stupid...
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commitdiff
2007-03-22
amwaterhouse
Commented out userDefColours for compilation. Class...
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commitdiff
2007-03-22
amwaterhouse
Now a JPanel, plus some modifications
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commitdiff
2007-03-22
amwaterhouse
Check exploded pos is not the same as current frame
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commitdiff
2007-03-22
amwaterhouse
Set gatherViewsHere false when making a new tab
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commitdiff
2007-03-22
amwaterhouse
Saves structures
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commitdiff
2007-03-22
amwaterhouse
Jalview colours added to Jmol
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commitdiff
2007-03-22
amwaterhouse
Saves Jmol status
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commitdiff
2007-03-19
jprocter
DAS features mapped to local reference frame
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commitdiff
2007-03-19
jprocter
translate aligned cDNA to aligned peptide
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commitdiff
2007-03-19
jprocter
retrieve and parse EMBL records to view exons.
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commitdiff
2007-03-19
jprocter
convenience method to get visible selected region.
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commitdiff
2007-03-19
jprocter
null exception when annotation created with no description.
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commitdiff
2007-03-19
jprocter
New method for mapping from common database sources...
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commitdiff
2007-03-19
jprocter
note about selenocystine.
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commitdiff
2007-03-19
jprocter
disambiguate jalview.datamodel.Mapping from castor...
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commitdiff
2007-03-19
jprocter
initial support for EMBL file parsing.
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commitdiff
2007-03-19
jprocter
equals operation used for canonicalisation of DBRefList...
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commitdiff
2007-03-19
jprocter
mapping implemented by MapList added to DBRefEntry.
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commitdiff
2007-03-19
jprocter
javadoc typo
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commitdiff
2007-03-19
jprocter
copy constructor
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commitdiff
2007-02-27
amwaterhouse
Uncomment graphics 2d bit
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commitdiff
2007-02-27
amwaterhouse
Launch applet jmol
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commitdiff
2007-02-27
amwaterhouse
Use paintAlignment
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commitdiff
2007-02-27
amwaterhouse
check conservation length
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commitdiff
2007-02-27
amwaterhouse
Structure listener
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commitdiff
2007-02-27
amwaterhouse
remove p+3 < query.length
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commitdiff
2007-02-27
amwaterhouse
No longer use ref to seqcanvas for painting
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commitdiff
2007-02-27
amwaterhouse
blank space for chain name if empty
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commitdiff
2007-02-27
amwaterhouse
keep record of atomIndeX
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commitdiff
2007-02-27
amwaterhouse
jmol added
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commitdiff
2007-02-12
amwaterhouse
>0 rather than -1 check
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commitdiff
2007-02-12
jprocter
tranfer pdbresno features to dataset sequence.
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commitdiff
2007-02-12
amwaterhouse
Reload jar files
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commitdiff
2007-02-12
amwaterhouse
Hashtable for previously loaded pdb files
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commitdiff
2007-02-12
amwaterhouse
Make checkbox bigger for text on mac
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commitdiff
2007-02-09
jprocter
added 'show overview' preference.
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commitdiff
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