2022-11-21 |
Jim Procter | Merge commit 'alpha/update_2_12_for_2_11_2_series_merge... |
tree | commitdiff |
2021-09-24 |
Jim Procter | JAL-3821 data file for failing test |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3821 less ambiguous base class name for EMBL and... |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3821 failing test |
tree | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 unit test for FileFormats updated for GenBank/ENA |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 file formats and IdentifyFile updates for... |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 refactored GenBank (and EMBL) flat file parser |
tree | commitdiff |
2021-09-16 |
gmungoc | JAL-3779 apply properties to all groups with given... |
tree | commitdiff |
2021-07-25 |
Jim Procter | JAL-3853 - tweak test again - since failed a few commit... |
tree | commitdiff |
2021-07-22 |
Jim Procter | JAL-3853 patch sequence annotation report code and... |
tree | commitdiff |
2021-02-17 |
Jim Procter | Merge branch 'feature/JAL-3692enaEndpoint' into patch... |
tree | commitdiff |
2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
tree | commitdiff |
2020-12-14 |
Ben Soares | JAL-3628 Test for doubly saved single backup file scheme |
tree | commitdiff |
2020-09-21 |
Jim Procter | Merge branch 'merge_review/JAL-3490_2_11_2_develop... |
tree | commitdiff |
2020-08-21 |
Jim Procter | JAL-3615 code tidy, improve unit test |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-2656 Java 8 compatible test for gzipped, refactored... |
tree | commitdiff |
2020-08-17 |
Jim Procter | JAL-3490 merged with 2.11.2 develop |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-07-24 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-07-22 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-06-14 |
BobHanson | JAL-3445 BSML BBB file format. |
tree | commitdiff |
2020-06-13 |
BobHanson | Merge branch 'Jalview-JS/develop.JAL-3445-BSML-reader... |
tree | commitdiff |
2020-06-10 |
BobHanson | JAL-3446 from applet, JAL-3584 tooltip fixes <br> and... |
tree | commitdiff |
2020-06-03 |
BobHanson | JAL-3446 from JAL-3253 ApplicationSingletonProvider... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader... Jalview-JS/develop.JAL-3445-BSML-reader |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader... |
tree | commitdiff |
2020-06-02 |
BobHanson | JAL-3626 from JAL-3253-applet Cache applicationProperti... |
tree | commitdiff |
2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2020-05-18 |
gmungoc | JAL-3529 test updated for revised signature of getDBRefs() |
tree | commitdiff |
2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop |
tree | commitdiff |
2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3574filterByPOS' into documentati... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3567virtualFeatureCoordinates... |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-04-14 |
Jim Procter | Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into... |
tree | commitdiff |
2020-04-14 |
Jim Procter | JAL-3529 revert ordering of DBRef addition so it reflec... |
tree | commitdiff |
2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e... |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsi... |
tree | commitdiff |
2020-03-06 |
Ben Soares | JAL-3529 improved regex in Stockholm UNIPROT accession... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 Fixed tests and added test for max-length... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 test for AC <Uniprot/EMBL> rather than DR... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 assert Uniprot refs must be provided as primar... |
tree | commitdiff |
2020-02-17 |
Jim Procter | JAL-3536 failing test and test data |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 more detailed asserts to detect whitespace... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 failing test for bug |
tree | commitdiff |
2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-09-20 |
Jim Procter | JAL-3070 JAL-2507 fix up test output and honour the... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-08-13 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 update unit test - protein variants not now... |
tree | commitdiff |
2019-06-07 |
tva | JAL-3291 issue fixed, passing tests added |
tree | commitdiff |
2019-06-07 |
tva | JAL-3285 fix errors in tests introduced by merge |
tree | commitdiff |
2019-06-06 |
gmungoc | JAL-3187 deletions (of Castor code) after merge from... |
tree | commitdiff |
2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
tree | commitdiff |
2019-05-27 |
gmungoc | JAL-3141 test file in test folder not examples |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Fixed tests |
tree | commitdiff |
2019-05-24 |
Ben Soares | JAL-3141 Reworked a lot of BackupFiles to allow the... |
tree | commitdiff |
2019-04-29 |
gmungoc | JAL-2738 JAL-2743 update unit test to match new VCF... |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
tree | commitdiff |
2019-03-19 |
Ben Soares | JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-03-12 |
gmungoc | JAL-1270 missing 'alwaysRun=true' added to setup/teardown |
tree | commitdiff |
2019-03-11 |
gmungoc | JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test... |
tree | commitdiff |
2019-03-04 |
gmungoc | Merge branch 'bug/JAL-3120restoreFeatureColour' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'bug/JAL-2791exportFilteredFeature' into... |
tree | commitdiff |
2019-02-28 |
gmungoc | Merge remote-tracking branch 'origin/feature/JAL-3141_b... |
tree | commitdiff |
2019-02-28 |
Jim Procter | Merge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 |
tree | commitdiff |
2019-02-22 |
gmungoc | JAL-2738 don't set AF as feature score |
tree | commitdiff |
2019-02-04 |
hansonr | fixing array processing order |
tree | commitdiff |
2019-01-29 |
hansonr | test package fix for List<DBRefEntry> DBrefs (untested) |
tree | commitdiff |
2019-01-28 |
Ben Soares | JAL-3141 fixed test |
tree | commitdiff |
2019-01-21 |
gmungoc | JAL-3187 unit tests updated and errors caught |
tree | commitdiff |
2019-01-21 |
Ben Soares | JAL-3141 Fixed tests for new placement of suffix after... |
tree | commitdiff |
2019-01-21 |
gmungoc | JAL-3187 (hacked up) show complement features on struct... |
tree | commitdiff |
2019-01-18 |
Jim Procter | Merge branch 'feature/JAL-3063jaxbNoCastor' into featur... |
tree | commitdiff |
2019-01-16 |
Jim Procter | Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... |
tree | commitdiff |
2019-01-09 |
Ben Soares | JAL-3141 removed redundant method to tests |
tree | commitdiff |
2019-01-08 |
Ben Soares | JAL-3141 Made some suggested changes from code review |
tree | commitdiff |
2018-12-19 |
Jim Procter | Merge branch 'features/JAL-1767pcaInProject' into bug... |
tree | commitdiff |
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