2016-04-08 |
Jim Procter | JAL-2050 JAL-1722 new getSelectedRange() method to... |
tree | commitdiff |
2016-04-06 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-06 |
tcofoegbu | JAL-1960 updated test to capture new behaviour improvement |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC about cyclic dataset sequence references... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 revise test for ambiguous case |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 ambiguous test for addSequenceFeature when... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC on addSequenceFeature behaviour after... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 test behaviour of copy constructor in differen... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2046 basic test to make sure any derived sequence... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2001 faster getMax/getMin selected column, with... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 ensure the right mapping is used to align... |
tree | commitdiff |
2016-04-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-2046 fix for broken test for deriveSequence |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 reworked AlignmentUtils.makeCdsAlignment and... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-653 updated test to match parsing of multi-valued... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 tweak to MapList.toString for debugging |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 generalised getLength() to handle [start1... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 test updated for canonicalised UNIPROT sequenc... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-2037 set DBRefEntry.version to "0" not "" in EMBL... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 fetch all Ensembl xrefs (except GO terms) |
tree | commitdiff |
2016-03-28 |
tcofoegbu | JAL-1919 Fixed broken test in DBRefUtilsTest |
tree | commitdiff |
2016-03-23 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-23 |
gmungoc | JAL-1705 add DBRefEntry for 'self' to retrieved transcr... |
tree | commitdiff |
2016-03-22 |
tcofoegbu | resolve conflict with Mungo's merge |
tree | commitdiff |
2016-03-22 |
tcofoegbu | JAL-1919 code improvement to make PDB sequence fetcher... |
tree | commitdiff |
2016-03-22 |
gmungoc | JAL-1191 isolated SequenceOntology (BioJava wrapper... |
tree | commitdiff |
2016-03-22 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-21 |
tcofoegbu | JAL-1919 refactor moved StructureViewerSettings |
tree | commitdiff |
2016-03-21 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-21 |
gmungoc | JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings |
tree | commitdiff |
2016-03-21 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-2016 corrected Javadoc, added test for anonymous... |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 code tidy/comment only |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 compute reverse complement of variants on... |
tree | commitdiff |
2016-03-15 |
tcofoegbu | JAL-1919 refined structure view annotation settings... |
tree | commitdiff |
2016-03-11 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1270 unit test for SequenceIdMatcher.SeqIdName |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 refactoring etc for fetching Ensembl --> Uniprot |
tree | commitdiff |
2016-03-11 |
tcofoegbu | JAL-1818 reimplemented sequence and annotation processi... |
tree | commitdiff |
2016-03-07 |
gmungoc | JAL-2023 CDS sequences added to / share alignment dataset |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 unit test for aligning with incomplete start... |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 include stop codons in derived CDS; support... |
tree | commitdiff |
2016-03-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
2016-02-26 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-02-26 |
tcofoegbu | JAL-1994 fix for broken tests |
tree | commitdiff |
2016-02-25 |
tcofoegbu | JAL-1919 initial support for mmCIF using JMol API.... |
tree | commitdiff |
2016-02-25 |
gmungoc | JAL-2015 parse/write Jalview feature format pushed... |
tree | commitdiff |
2016-02-24 |
gmungoc | JAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 regular expression updates, tests, other refac... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 updated for change to CrossRef signature |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 return Ensembl genes for model species for... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 lenient DBRef matcher added (accession id... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 helper method for mapping excluding stop codon |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1270 remove trailing space + test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 various refactoring towards Uniprot-to-Ensembl... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1191 additions to SOLite, tweak to test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 JAL-1686 stronger SequenceFeature.equals(... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-2008 avoid unnecessary repaints; signatures changed... |
tree | commitdiff |
2016-02-09 |
tcofoegbu | merge develop |
tree | commitdiff |
2016-02-04 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-2005 added (stable) sort methods parameterised by |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 further unit tests |
tree | commitdiff |
2016-02-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 tests added |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 refine feature copying to including 5' and... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 tests added, minor bugfix and refactoring |
tree | commitdiff |
2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 merge contiguous ranges when constructing... |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name... |
tree | commitdiff |
2016-01-26 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 reworked Ensembl clients now fetching and... |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 removed (only) usage of otherwise unused constant |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 features transferred to CDS sequence; makeExon... |
tree | commitdiff |
2016-01-21 |
tcofoegbu | JAL-1479 JAL-1979 updated the modified-aminoacid triple... |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 tidy and todo comment, no functional change |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 tests for amended toString |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 isFromForwardStrand added; toString (for debug... |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 canonicalise ENSEMBL name; code tidy |
tree | commitdiff |
2016-01-21 |
tcofoegbu | JAL-1919 basic support for importing and viewing mmCIF... |
tree | commitdiff |
2016-01-11 |
gmungoc | JAL-1989 map hidden column ranges |
tree | commitdiff |
2016-01-11 |
gmungoc | JAL-1989 more unit tests and encapsulation for ColumnSe... |
tree | commitdiff |
2016-01-08 |
gmungoc | JAL-1705 DbSourceProxy properties converted to methods... |
tree | commitdiff |
2016-01-07 |
tcofoegbu | merge |
tree | commitdiff |
2016-01-07 |
tcofoegbu | JAL-1479 implemented timestamp based caching of SIFTS... |
tree | commitdiff |
2016-01-05 |
gmungoc | JAL-653 updating 'align as' tests to match latest tweak... |
tree | commitdiff |
2016-01-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-1705_... |
tree | commitdiff |
2016-01-05 |
gmungoc | JAL-1191 check for obsolete term when descriptions... |
tree | commitdiff |
2015-12-23 |
gmungoc | JAL-1191 zipped SO OBO file added to /resources, more... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-1191 more test cases |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-1191 SequenceOntology wrapping/caching SO.OBO via... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 realise virtual mappings and align when adding... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-391 new Calculate options to Reverse, Reverse Compl... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame collections changed from... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 GFF new/refactored helper classes |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame internal refactor, merge... |
tree | commitdiff |
2015-12-03 |
gmungoc | JAL-653 code tidy / tests for 'realise gff mappings' |
tree | commitdiff |
next |