2016-04-26 |
Jim Procter | JAL-2079 update GPL header for new Xfam tests |
tree | commitdiff |
2016-04-26 |
Jim Procter | JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network... |
tree | commitdiff |
2016-04-26 |
tcofoegbu | JAL-2071 improvement to get column data files as InputS... |
tree | commitdiff |
2016-04-26 |
tcofoegbu | JAL-2071 House keeping |
tree | commitdiff |
2016-04-25 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-04-25 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-04-25 |
tcofoegbu | JAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search |
tree | commitdiff |
2016-04-24 |
Jim Procter | Merge branch 'JAL-2075_features_hiddeng' into develop |
tree | commitdiff |
2016-04-24 |
Jim Procter | JAL-2075 test showing hidden columns bug in feature... |
tree | commitdiff |
2016-04-24 |
Jim Procter | JAL-2075 refactor FeatureScoreModel to native testNG... |
tree | commitdiff |
2016-04-23 |
Jim Procter | JAL-2075 findPosition for SeqCigar (with test) |
tree | commitdiff |
2016-04-22 |
tcofoegbu | JAL-2071 further refactoring, optimisation, and house... |
tree | commitdiff |
2016-04-22 |
gmungoc | JAL-2068 code and test for case of minValue == maxValue |
tree | commitdiff |
2016-04-22 |
gmungoc | JAL-2068 convenience helper method for graduated score... |
tree | commitdiff |
2016-04-19 |
tcofoegbu | JAL-2071 architectural improvement for Plugable Free... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2041 add ID,clinical_significance to feature attrib... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2041 clinical_significance shown on sequence featur... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2049 revised computePeptideVariants to transfer... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-1705 refactored/utility methods to detect e.g.... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-653 test updated for 'use ID for description' |
tree | commitdiff |
2016-04-13 |
Jim Procter | JAL-2046 test to demonstrate feature duplication bug |
tree | commitdiff |
2016-04-13 |
Jim Procter | Merge branch 'bug/JAL-2046_ds_sharing_features_broken... |
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2016-04-13 |
tcofoegbu | JAL-1270 more fix for failing Functional test |
tree | commitdiff |
2016-04-13 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-13 |
tcofoegbu | JAL-1270 Fixed failing tests due to race conditions... |
tree | commitdiff |
2016-04-12 |
gmungoc | JAL-2049 separate protein variant per dna variant ... |
tree | commitdiff |
2016-04-11 |
tcofoegbu | JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... |
tree | commitdiff |
2016-04-08 |
Jim Procter | Merge branch 'feature/JAL-2050_intronhidden' into develop |
tree | commitdiff |
2016-04-08 |
Jim Procter | JAL-2050 JAL-1722 new getSelectedRange() method to... |
tree | commitdiff |
2016-04-06 |
tcofoegbu | merge |
tree | commitdiff |
2016-04-06 |
tcofoegbu | JAL-1960 updated test to capture new behaviour improvement |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC about cyclic dataset sequence references... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 revise test for ambiguous case |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 ambiguous test for addSequenceFeature when... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 RFC on addSequenceFeature behaviour after... |
tree | commitdiff |
2016-04-05 |
Jim Procter | JAL-2046 test behaviour of copy constructor in differen... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2046 basic test to make sure any derived sequence... |
tree | commitdiff |
2016-04-04 |
Jim Procter | JAL-2001 faster getMax/getMin selected column, with... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 ensure the right mapping is used to align... |
tree | commitdiff |
2016-04-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-2046 fix for broken test for deriveSequence |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 reworked AlignmentUtils.makeCdsAlignment and... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-653 updated test to match parsing of multi-valued... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 tweak to MapList.toString for debugging |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 generalised getLength() to handle [start1... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 test updated for canonicalised UNIPROT sequenc... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-2037 set DBRefEntry.version to "0" not "" in EMBL... |
tree | commitdiff |
2016-04-01 |
gmungoc | JAL-1705 fetch all Ensembl xrefs (except GO terms) |
tree | commitdiff |
2016-03-28 |
tcofoegbu | JAL-1919 Fixed broken test in DBRefUtilsTest |
tree | commitdiff |
2016-03-23 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-23 |
gmungoc | JAL-1705 add DBRefEntry for 'self' to retrieved transcr... |
tree | commitdiff |
2016-03-22 |
tcofoegbu | resolve conflict with Mungo's merge |
tree | commitdiff |
2016-03-22 |
tcofoegbu | JAL-1919 code improvement to make PDB sequence fetcher... |
tree | commitdiff |
2016-03-22 |
gmungoc | JAL-1191 isolated SequenceOntology (BioJava wrapper... |
tree | commitdiff |
2016-03-22 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-21 |
tcofoegbu | JAL-1919 refactor moved StructureViewerSettings |
tree | commitdiff |
2016-03-21 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-03-21 |
gmungoc | JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings |
tree | commitdiff |
2016-03-21 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-2016 corrected Javadoc, added test for anonymous... |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 code tidy/comment only |
tree | commitdiff |
2016-03-15 |
gmungoc | JAL-1705 compute reverse complement of variants on... |
tree | commitdiff |
2016-03-15 |
tcofoegbu | JAL-1919 refined structure view annotation settings... |
tree | commitdiff |
2016-03-11 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1270 unit test for SequenceIdMatcher.SeqIdName |
tree | commitdiff |
2016-03-11 |
gmungoc | JAL-1705 refactoring etc for fetching Ensembl --> Uniprot |
tree | commitdiff |
2016-03-11 |
tcofoegbu | JAL-1818 reimplemented sequence and annotation processi... |
tree | commitdiff |
2016-03-07 |
gmungoc | JAL-2023 CDS sequences added to / share alignment dataset |
tree | commitdiff |
2016-03-03 |
tcofoegbu | JAL-1919 fixed bug causing PDBfile test failure |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 unit test for aligning with incomplete start... |
tree | commitdiff |
2016-03-03 |
gmungoc | JAL-1705 include stop codons in derived CDS; support... |
tree | commitdiff |
2016-03-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
2016-02-26 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-02-26 |
tcofoegbu | JAL-1994 fix for broken tests |
tree | commitdiff |
2016-02-25 |
tcofoegbu | JAL-1919 initial support for mmCIF using JMol API.... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 regular expression updates, tests, other refac... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 updated for change to CrossRef signature |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 return Ensembl genes for model species for... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 lenient DBRef matcher added (accession id... |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 helper method for mapping excluding stop codon |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1270 remove trailing space + test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 various refactoring towards Uniprot-to-Ensembl... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1191 additions to SOLite, tweak to test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 JAL-1686 stronger SequenceFeature.equals(... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-2008 avoid unnecessary repaints; signatures changed... |
tree | commitdiff |
2016-02-09 |
tcofoegbu | merge develop |
tree | commitdiff |
2016-02-04 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-2005 added (stable) sort methods parameterised by |
tree | commitdiff |
2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 further unit tests |
tree | commitdiff |
2016-02-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 tests added |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 refine feature copying to including 5' and... |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 tests added, minor bugfix and refactoring |
tree | commitdiff |
2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
2016-01-28 |
gmungoc | JAL-1705 merge contiguous ranges when constructing... |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name... |
tree | commitdiff |
2016-01-26 |
tcofoegbu | develop merge |
tree | commitdiff |
next |