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JAL-2110 SequenceI.isProtein method
[jalview.git]
/
test
/
2016-06-23
Jim Procter
JAL-2110 SequenceI.isProtein method
tree
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commitdiff
2016-06-22
Jim Procter
JAL-2110 remove hardwired detection of search context...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-06-21
gmungoc
JAL-1270 remove test artefact file after test
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1270 ensure before/after clauses have at least...
tree
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commitdiff
2016-06-21
gmungoc
JAL-1270 added runAlways=true to setUp method
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commitdiff
2016-06-21
Jim Procter
JAL-1369 make sure desktop is cleared before test starts
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commitdiff
2016-06-21
Jim Procter
JAL-1369 jalview2xml tests need to be run sequentially
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commitdiff
2016-06-21
gmungoc
JAL-2110 updated unit test to match code changes
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commitdiff
2016-06-21
Jim Procter
JAL-1369 fix the test
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commitdiff
2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1369 failing test
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2110 pass dataset to makeCDSalignment
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commitdiff
2016-06-20
Jim Procter
JAL-2110 copy alcodonframes only if copy constructor...
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commitdiff
2016-06-19
Jim Procter
JAL-2110 distinct alignedcodonframe entries for tests
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commitdiff
2016-06-19
Jim Procter
JAL-2110 test alcodonframes must be distinct
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commitdiff
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
tree
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commitdiff
2016-06-16
Jim Procter
tests for validating start-end number/sequence length...
tree
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commitdiff
2016-06-16
Jim Procter
JAL-2110 change test for desired behaviour of getCodonF...
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commitdiff
2016-06-16
Jim Procter
JAL-2110 throw implementation error if not given a...
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commitdiff
2016-06-16
gmungoc
JAL-2112 optimisation of EMBL CDS parsing
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commitdiff
2016-06-15
Jim Procter
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-15
gmungoc
JAL-2025 unit tests added
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commitdiff
2016-06-15
gmungoc
JAL-2101 unit test updated to match config file
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commitdiff
2016-06-14
gmungoc
JAL-2114 more helpful reporting of parse failures
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commitdiff
2016-06-14
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-14
gmungoc
JAL-2110 fixes to dbref resolution and mappings, use...
tree
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commitdiff
2016-06-14
tcofoegbu
JAL-2047 resolved structure chooser's displayed column...
tree
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commitdiff
2016-06-14
gmungoc
JAL-1686 JAL-2110 equals and/or hashCode method added
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commitdiff
2016-06-10
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-10
tcofoegbu
JAL-1479 updated SIFTS FTP download URL, added improvem...
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commitdiff
2016-06-10
Jim Procter
JAL-1941 remove improper test tag from Annotate3D test...
tree
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commitdiff
2016-06-10
Jim Procter
JAL-1941 Annotate3d tests should be in network group
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commitdiff
2016-06-09
gmungoc
JAL-2110 work in progress
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commitdiff
2016-06-03
gmungoc
JAL-2110 random stuff
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commitdiff
2016-06-02
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-06-01
Jim Procter
JAL-2038 fix tests for case insensitive eSequenceIdMatcher
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commitdiff
2016-05-31
gmungoc
JAL-2110 refactor + tests to allow a dbref version...
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'develop' into features/JAL-2113_emblXml1.2
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commitdiff
2016-05-30
gmungoc
JAL-1670 JAL-2018 updated unit test for added example...
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commitdiff
2016-05-30
gmungoc
JAL-1989 equals method strengthened to fully match...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 added hashCode and equals, renamed field to...
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commitdiff
2016-05-26
gmungoc
JAL-2079 update examples to new pfam.xfam.org domain
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commitdiff
2016-05-26
gmungoc
JAL-2113 additions to embl_mapping.xml / data models...
features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-25
gmungoc
JAL-2110 wip CrossRefs rewrite of CrossRef
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commitdiff
2016-05-23
gmungoc
JAL-2113 remove spaces in sequence from unmarshalling...
tree
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commitdiff
2016-05-23
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2114 save 'raw' ENA location as a sequence feature...
tree
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commitdiff
2016-05-23
gmungoc
JAL-2113 EBIFetchClient refactor / unit tests / remove...
tree
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commitdiff
2016-05-23
gmungoc
Merge branch 'develop' into features/JAL-2113_emblXml1.2
tree
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commitdiff
2016-05-20
gmungoc
JAL-2114 explicit invalid test cases added
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commitdiff
2016-05-20
gmungoc
JAL-2113 corrected test to use valid location syntax
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commitdiff
2016-05-20
gmungoc
JAL-2113 embl_mapping.xml and code updated for EMBL...
tree
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commitdiff
2016-05-20
gmungoc
JAL-2114 accept "<123..178" or "123..>178" format
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commitdiff
2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
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commitdiff
2016-05-20
gmungoc
JAL-2049 unit test updated for HGVS syntax, feature...
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commitdiff
2016-05-19
gmungoc
JAL-2114 added single-locus case and more error tests
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commitdiff
2016-05-19
gmungoc
JAL-2114 parser + tests for GenBank location descriptors
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commitdiff
2016-05-18
gmungoc
JAL-2049 use HGVS notation for variant on protein residue
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commitdiff
2016-05-17
tcofoegbu
merge
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commitdiff
2016-05-17
tcofoegbu
JAL-1270 Fixed anntatedPDBFileInputTest and updated...
tree
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
tcofoegbu
merge
tree
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commitdiff
2016-05-09
tcofoegbu
JAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
tree
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commitdiff
2016-05-09
gmungoc
JAL-2098 identify feature file with "<" in feature...
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
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commitdiff
2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
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commitdiff
2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
tree
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commitdiff
2016-05-02
Jim Procter
JAL-1270 move some Network tests to External (require...
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commitdiff
2016-05-02
Jim Procter
JAL-1270 capitalise test groups
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-29
tcofoegbu
merge
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commitdiff
2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
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commitdiff
2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
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commitdiff
2016-04-29
Jim Procter
JAL-192 ‘efficiently’ locate visible bounds for a seque...
tree
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commitdiff
2016-04-28
tcofoegbu
JAL-1563 fixed failing tests for FTS Rest Client core
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commitdiff
2016-04-27
tcofoegbu
JAL-1563 Added Id (Uniprot Id) to the dynamic column...
tree
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commitdiff
2016-04-26
Jim Procter
JAL-2079 update GPL header for new Xfam tests
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commitdiff
2016-04-26
Jim Procter
JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
tree
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commitdiff
2016-04-26
tcofoegbu
JAL-2071 improvement to get column data files as InputS...
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commitdiff
2016-04-26
tcofoegbu
JAL-2071 House keeping
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commitdiff
2016-04-25
tcofoegbu
develop merge
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commitdiff
2016-04-25
tcofoegbu
develop merge
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commitdiff
2016-04-25
tcofoegbu
JAL-2071 added unit tests for FTSRestClient
features/JAL-1563_uniprot-free-text-search
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commitdiff
2016-04-24
Jim Procter
Merge branch 'JAL-2075_features_hiddeng' into develop
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commitdiff
2016-04-24
Jim Procter
JAL-2075 test showing hidden columns bug in feature...
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commitdiff
2016-04-24
Jim Procter
JAL-2075 refactor FeatureScoreModel to native testNG...
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commitdiff
2016-04-23
Jim Procter
JAL-2075 findPosition for SeqCigar (with test)
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commitdiff
2016-04-22
tcofoegbu
JAL-2071 further refactoring, optimisation, and house...
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commitdiff
2016-04-22
gmungoc
JAL-2068 code and test for case of minValue == maxValue
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commitdiff
2016-04-22
gmungoc
JAL-2068 convenience helper method for graduated score...
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commitdiff
2016-04-19
tcofoegbu
JAL-2071 architectural improvement for Plugable Free...
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commitdiff
2016-04-14
gmungoc
JAL-2041 add ID,clinical_significance to feature attrib...
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commitdiff
2016-04-14
gmungoc
JAL-2041 clinical_significance shown on sequence featur...
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commitdiff
2016-04-14
gmungoc
JAL-2049 revised computePeptideVariants to transfer...
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commitdiff
2016-04-14
gmungoc
JAL-1705 refactored/utility methods to detect e.g....
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commitdiff
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