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jalview.git
2024-04-26 Ben SoaresJAL-4397 Test all fixed on linux. Given leeway to... commit | commitdiff
2024-04-26 Renia CorreyaJAL-4386 Drop down for secondary structure sources... commit | commitdiff
2024-04-24 Renia CorreyaJAL-4386 PCA/Tree Calculation for Secondary Structures... commit | commitdiff
2024-04-22 Ben SoaresJAL-4397 Allow some leeway in automatically calculated... commit | commitdiff
2024-04-18 Ben SoaresJAL-4397 fixed testresetIdWidth() test on macos commit | commitdiff
2024-04-18 MorellThomasMerge branch 'test/progressBar' into feature/JAL-4159_p... commit | commitdiff
2024-04-18 MorellThomasImplemented ProgressBar for PaSiMap commit | commitdiff
2024-04-16 Renia CorreyaJAL-4386 Calculate tree using secondary structure annot... commit | commitdiff
2024-04-12 MorellThomasinlcude progress commit | commitdiff
2024-04-09 James ProcterJAL-4159 recover 2.11.3 series gradle/build.properties... spike/JAL-4159_pasimap_2113_series commit | commitdiff
2024-04-09 James ProcterJAL-4390 don't output alignment to text panel and stdou... commit | commitdiff
2024-03-15 MorellThomasFix output of all dimensions commit | commitdiff
2024-03-15 MorellThomasAlogirthm working, but still giving slightly off results commit | commitdiff
2024-03-13 Renia CorreyaJAL-4386_Added changes in similarity score calculation... commit | commitdiff
2024-03-08 Renia CorreyaJAL-4386 Corrected failed test case. commit | commitdiff
2024-03-08 Renia CorreyaJAL-4386 Added further checks for sequences that have... commit | commitdiff
2024-03-08 Renia CorreyaJAL-4386 Calculate tree using secondary structure annot... commit | commitdiff
2024-03-07 MorellThomasInlcude 8 dimensions commit | commitdiff
2024-03-06 MorellThomasFix PaSiMap on selected sequences commit | commitdiff
2024-03-06 MorellThomasTest version to switch branches commit | commitdiff
2024-01-31 MorellThomasFix output points column labels commit | commitdiff
2024-01-23 James ProcterMerge branch 'develop' into releases/Release_2_11_3_Branch commit | commitdiff
2024-01-23 James ProcterJAL-4356 release notes commit | commitdiff
2024-01-23 James ProcterJAL-4356 update release notes for 2.11.3.3 commit | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align... commit | commitdiff
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments commit | commitdiff
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... commit | commitdiff
2024-01-23 Ben SoaresJAL-4290 fixed tests commit | commitdiff
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2024-01-23 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff
2024-01-23 James ProcterJAL-4353 singleThread all tests commit | commitdiff
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling... commit | commitdiff
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect... commit | commitdiff
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain commit | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor... commit | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4368_default_colourscheme_applied... commit | commitdiff
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch commit | commitdiff
2024-01-19 Ben SoaresJAL-4373 Fix Main-Class and other attribute settings... commit | commitdiff
2024-01-10 MorellThomasFixed PaSiMap output columns commit | commitdiff
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately commit | commitdiff
2023-12-19 Ben SoaresJAL-4290 Fixed one test commit | commitdiff
2023-12-18 Ben SoaresJAL-4290 not quite working tests commit | commitdiff
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main() commit | commitdiff
2023-12-15 Ben SoaresMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings... commit | commitdiff
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... commit | commitdiff
2023-12-15 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_figure_wi... commit | commitdiff
2023-12-15 James ProcterJAL-4290 new CommandsTest.headlessOrGuiImageOutputTest... bug/JAL-4290_headless_alignment_figure_with_sse commit | commitdiff
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to... commit | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into releases/Release_2_11_3_Branch commit | commitdiff
2023-12-14 James ProcterJAL-4356 update release notes commit | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff
2023-12-14 James ProcterJAL-4217 singleThread all tests commit | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling commit | commitdiff
2023-12-12 Ben SoaresJAL-4353 bigger tighter test commit | commitdiff
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... commit | commitdiff
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... commit | commitdiff
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... commit | commitdiff
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff
2023-12-12 James ProcterJAL-4353 failing test commit | commitdiff
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files... commit | commitdiff
2023-12-11 James ProcterJAL-4192 more specific info about versions needed commit | commitdiff
2023-12-06 Ben SoaresJAL-4353 re-used random color code commit | commitdiff
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... commit | commitdiff
2023-12-06 James ProcterJAL-4356 bump RELEASE commit | commitdiff
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3... commit | commitdiff
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... commit | commitdiff
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... commit | commitdiff
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA... commit | commitdiff
2023-12-05 MorellThomasCleanup, note: rectangular selection works by holding... commit | commitdiff
2023-12-05 MorellThomasAdapts PCA points to support rectangular selection commit | commitdiff
2023-12-05 MorellThomasEnable rectangular selection for PaSiMap commit | commitdiff
2023-12-04 MorellThomasNew independent jbgui Panel for PaSiMap. Revert the... commit | commitdiff
2023-12-04 MorellThomasNew GPCAPanel button : output pairwise alignments ... commit | commitdiff
2023-12-01 James ProcterMerge branch 'releases/Release_2_11_3_Branch' commit | commitdiff
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version... commit | commitdiff
2023-12-01 MorellThomasApplying adjustablenw_params.patch (JAL-4159) commit | commitdiff
2023-11-30 James ProcterMerge branch 'develop' into releases/Release_2_11_3_Branch Release_2_11_3_2 commit | commitdiff
2023-11-30 James ProcterJAL-4351 update release notes for JAL-4342 commit | commitdiff
2023-11-30 James ProcterMerge branch 'patch/JAL-4342_emptyannotationsexport... commit | commitdiff
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport commit | commitdiff
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 commit | commitdiff
2023-11-30 James ProcterJAL-4351 2.11.3.2 scheduled for 1st December release commit | commitdiff
2023-11-30 James ProcterMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... commit | commitdiff
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... commit | commitdiff
2023-11-27 MorellThomasCommit before pushing to Jalview remote commit | commitdiff
2023-11-27 James ProcterMerge branch 'releases/Release_2_11_3_Branch' commit | commitdiff
2023-11-22 James ProcterMerge branch 'develop' into releases/Release_2_11_3_Branch Release_2_11_3_1 commit | commitdiff
2023-11-22 James ProcterJAL-4343 fix insufficient-caffeine error - add whats... commit | commitdiff
2023-11-22 James ProcterMerge branch 'develop' into releases/Release_2_11_3_Branch commit | commitdiff
2023-11-22 James ProcterJAL-4343 release today, update notes for JAL-4348 and... commit | commitdiff
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