pvtroshin [Tue, 6 Sep 2011 17:15:55 +0000 (17:15 +0000)]
comment out services checkers from the security constrain
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4574
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 6 Sep 2011 17:15:22 +0000 (17:15 +0000)]
doc update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4573
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 6 Sep 2011 16:12:47 +0000 (16:12 +0000)]
Web services status checking servlets, new clustalo x32 binary from Fabian, other small changes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4571
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 6 Sep 2011 12:05:44 +0000 (12:05 +0000)]
Head title change
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4568
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 5 Sep 2011 15:20:11 +0000 (15:20 +0000)]
Update for web services stubs
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4566
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 5 Sep 2011 15:12:40 +0000 (15:12 +0000)]
Binaries for Mac in a war file
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4565
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 5 Sep 2011 15:11:55 +0000 (15:11 +0000)]
updates to web site
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4564
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 5 Sep 2011 15:11:23 +0000 (15:11 +0000)]
Adding listener for setting executable flag on the web application start up
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4563
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 5 Sep 2011 15:09:58 +0000 (15:09 +0000)]
Add an implementation for Services.getServiceInfo method and categorization for services.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4562
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 2 Sep 2011 17:22:37 +0000 (17:22 +0000)]
web pages updates
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4559
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 25 Aug 2011 15:46:49 +0000 (15:46 +0000)]
An attempt to automatically make binaries executables - not successful but the code is commented out and let in for future use
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4548
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 16 Aug 2011 13:22:10 +0000 (13:22 +0000)]
Minor changes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4526
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 16 Aug 2011 11:38:54 +0000 (11:38 +0000)]
minor change
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4525
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 16 Aug 2011 11:38:38 +0000 (11:38 +0000)]
adding one more window web service into the test case
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4524
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 13:37:46 +0000 (13:37 +0000)]
rearrangement for mac binaries to link up with a web page
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4509
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 13:35:18 +0000 (13:35 +0000)]
Javadoc fixes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4508
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 13:34:38 +0000 (13:34 +0000)]
adding clustalO documentation
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4507
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 13:34:07 +0000 (13:34 +0000)]
updated javadoc
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4506
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 13:29:30 +0000 (13:29 +0000)]
remove dm javadoc to update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4505
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 13:02:22 +0000 (13:02 +0000)]
delete old javadoc to update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4504
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 12:39:57 +0000 (12:39 +0000)]
build client source when build all
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4503
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 12:38:29 +0000 (12:38 +0000)]
Mac binaries
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4502
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 12:36:42 +0000 (12:36 +0000)]
website docs update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4501
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 12 Aug 2011 12:32:00 +0000 (12:32 +0000)]
Services class refactored to get rid of engines and runners dependencies.
Build script has new task to pack client sources
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4500
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 15:00:41 +0000 (15:00 +0000)]
Change header template for a new version
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4495
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 15:00:30 +0000 (15:00 +0000)]
Change header template for a new version
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4494
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 15:00:12 +0000 (15:00 +0000)]
Change header template for a new version
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4493
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 12:56:46 +0000 (12:56 +0000)]
Adding new web service, getting rid of virtual box in docs
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4491
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 12:00:20 +0000 (12:00 +0000)]
clustalo x64 from the developer
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4490
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 11:57:24 +0000 (11:57 +0000)]
x86 and x64 clustalo binaries
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4489
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 11:56:53 +0000 (11:56 +0000)]
x86 clustalo binary
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4488
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 11 Aug 2011 10:45:09 +0000 (10:45 +0000)]
Fixes to testcase, take into account the new WS
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4487
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 10 Aug 2011 16:07:37 +0000 (16:07 +0000)]
Drop support for VirtualBox
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4484
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 14:44:32 +0000 (14:44 +0000)]
dundee executable conf
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4476
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 14:38:34 +0000 (14:38 +0000)]
Get rid of v_hmem settings
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4475
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 14:38:26 +0000 (14:38 +0000)]
Get rid of v_hmem settings
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4474
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 14:32:46 +0000 (14:32 +0000)]
Comments
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4473
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:22:09 +0000 (13:22 +0000)]
update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4470
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:21:54 +0000 (13:21 +0000)]
ClustalO servlets
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4469
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:21:26 +0000 (13:21 +0000)]
reverting cluster engine settings (disabled by default)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4468
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:19:45 +0000 (13:19 +0000)]
ClustalO settings
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4467
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:19:25 +0000 (13:19 +0000)]
ClustalO compile
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4466
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:18:35 +0000 (13:18 +0000)]
clustalo 64x binary
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4465
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:17:10 +0000 (13:17 +0000)]
Clustal Omega web service wrapper and tester
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4464
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:16:38 +0000 (13:16 +0000)]
Clustal Omega web service wrapper and tester
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4463
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 4 Aug 2011 13:16:16 +0000 (13:16 +0000)]
Clustal Omega web service wrapper and tester
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4462
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 3 Aug 2011 17:06:32 +0000 (17:06 +0000)]
Wrapper for Clustal Omega.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4458
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 2 Aug 2011 16:50:27 +0000 (16:50 +0000)]
Updates to a web site
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4441
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 2 Aug 2011 16:49:23 +0000 (16:49 +0000)]
fix for a broken link to a static page
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4440
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 13 Jul 2011 11:31:19 +0000 (11:31 +0000)]
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4412
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 13 Jul 2011 11:31:08 +0000 (11:31 +0000)]
new web site design and updates to the web pages
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4411
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 13 Jul 2011 11:30:06 +0000 (11:30 +0000)]
new images for jabaws 2 web site, getting rid of old images
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4410
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:18:53 +0000 (12:18 +0000)]
formatting change
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4396
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:15:05 +0000 (12:15 +0000)]
ia32 iupred
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4395
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:14:49 +0000 (12:14 +0000)]
ia32 iupred
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4394
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:13:54 +0000 (12:13 +0000)]
Pre release Executable.properties, help added, unused properties commented out
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4393
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 10:56:04 +0000 (10:56 +0000)]
Better method for searching JAVA
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4392
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 1 Jul 2011 10:59:53 +0000 (10:59 +0000)]
Add servlet for public usage stats display.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4384
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 1 Jul 2011 09:42:12 +0000 (09:42 +0000)]
Limits are optional so correct tests
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4379
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 1 Jul 2011 09:41:27 +0000 (09:41 +0000)]
remove assert
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4378
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 30 Jun 2011 17:22:57 +0000 (17:22 +0000)]
obtain JAVA executable path from the JAVA_HOME variable. Does not require path to java for jar libraries.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4376
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 28 Jun 2011 16:54:59 +0000 (16:54 +0000)]
Stat collector updates to work with JABA 2 input & output files
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4366
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 28 Jun 2011 15:30:02 +0000 (15:30 +0000)]
Clean database & small changes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4363
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 17:11:09 +0000 (17:11 +0000)]
Expose a few methods of Client and WSTester as API for Jim, new distributables.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4343
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 16:40:37 +0000 (16:40 +0000)]
Slight refactoring
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4342
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 15:33:31 +0000 (15:33 +0000)]
Minor tweaks
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4340
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 14:55:27 +0000 (14:55 +0000)]
Dundee compiled x86 binaries a few fixes for compile script
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4338
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 13:48:11 +0000 (13:48 +0000)]
Build script improvements & updated util
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4337
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 13:42:45 +0000 (13:42 +0000)]
Generalizing configuration prior to release.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4336
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 13:29:22 +0000 (13:29 +0000)]
remove settings as separate settings no longer required
Add separate conf setting for engines and executables for dundee
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4334
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 24 Jun 2011 23:32:23 +0000 (23:32 +0000)]
Get rid of unused code
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4329
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 24 Jun 2011 17:17:29 +0000 (17:17 +0000)]
Further simplification of build tasks
get rid of biojava jar as it's not in use
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4328
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:15:51 +0000 (14:15 +0000)]
update to compbio.utils and a few small changes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4327
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:11:27 +0000 (14:11 +0000)]
build script updated
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4326
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:10:48 +0000 (14:10 +0000)]
links update (not checked though)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4325
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:10:02 +0000 (14:10 +0000)]
compbio projects sources
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4324
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:08:55 +0000 (14:08 +0000)]
pack binaries from folders into archives for easy download
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4323
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:04:51 +0000 (14:04 +0000)]
relocated to website/archive folder
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4322
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:04:22 +0000 (14:04 +0000)]
relocate pre-compiled executables from binaries folder
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4321
e3abac25-378b-4346-85de-
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pvtroshin [Thu, 23 Jun 2011 14:02:01 +0000 (14:02 +0000)]
remove old executables
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4320
e3abac25-378b-4346-85de-
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pvtroshin [Thu, 23 Jun 2011 12:09:51 +0000 (12:09 +0000)]
rename
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4317
e3abac25-378b-4346-85de-
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pvtroshin [Thu, 23 Jun 2011 10:56:00 +0000 (10:56 +0000)]
regenerated stubs & TODO
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4314
e3abac25-378b-4346-85de-
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pvtroshin [Thu, 23 Jun 2011 09:47:41 +0000 (09:47 +0000)]
Adding latest test results
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4313
e3abac25-378b-4346-85de-
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pvtroshin [Thu, 23 Jun 2011 09:46:17 +0000 (09:46 +0000)]
Remove old test from web site to replace with most recent
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4312
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:34:27 +0000 (09:34 +0000)]
Disable failed tests
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4311
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:16:47 +0000 (09:16 +0000)]
modification to enable globplot run on nanna (PYTHONPATH variable)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4310
e3abac25-378b-4346-85de-
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pvtroshin [Thu, 23 Jun 2011 09:15:05 +0000 (09:15 +0000)]
Fixes to test cases
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4309
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 22 Jun 2011 17:26:22 +0000 (17:26 +0000)]
annotate test with appropriate groups
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4308
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 22 Jun 2011 17:11:48 +0000 (17:11 +0000)]
Fix for testcases
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4307
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 17:17:08 +0000 (17:17 +0000)]
Fixes for failed test cases (most was due to the data being used or problems with test cases themselves)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4303
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 15:44:23 +0000 (15:44 +0000)]
custom test suit xml
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4302
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:48:37 +0000 (14:48 +0000)]
tcoffee updated docs & todo
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4301
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 14:47:39 +0000 (14:47 +0000)]
IA32 and x64 tcoffee binaries are added
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4300
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 14:34:00 +0000 (14:34 +0000)]
getting rid of ambiguous documentation folder. all prog_doc are now stored in website/prog_docs
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4299
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 14:25:36 +0000 (14:25 +0000)]
new version of tcoffee 8.99 not yet compiled for ia32 linux (currently compiled for dundee cluster)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4298
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:14:44 +0000 (14:14 +0000)]
removing tcoffee to update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4297
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 12:29:25 +0000 (12:29 +0000)]
Revert multithreading support for mafft as it does not seem to work
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4296
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 12:29:09 +0000 (12:29 +0000)]
Revert multithreading support for mafft as it does not seem to work
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4295
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 12:06:02 +0000 (12:06 +0000)]
Get rind of NativeClusterJob interface as pretty much every jobs best to use some cluster settings, and they are simply defined in the executable conf file and passed by the SkeletalExecutable.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4294
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 21 Jun 2011 11:35:08 +0000 (11:35 +0000)]
mafft new location
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4293
e3abac25-378b-4346-85de-
24260fe3988d
git://source.jalview.org / jabaws.git / log