source.jalview.org Git - jabaws.git/log

pvtroshin [Wed, 2 Feb 2011 16:53:10 +0000 (16:53 +0000)]

Adding Jronn WS to conf files

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3661 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 2 Feb 2011 16:30:22 +0000 (16:30 +0000)]

Remove Annotated and MuptiAnnotated Sequence use Score instead

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3660 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 26 Jan 2011 13:17:56 +0000 (13:17 +0000)]

Replacing web site content with fresh version from JWS2 (JABAWS production ) branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3640 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 26 Jan 2011 13:14:19 +0000 (13:14 +0000)]

Remove web site to encorporate JWS2 changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3639 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 7 Jan 2011 14:14:40 +0000 (14:14 +0000)]

Make muscle executable compilation not static to fix problem on Macs
Remove one more digit from the head of non repeatable number to prevent it going beyond long on Mac VMs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3585 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Dec 2010 16:31:53 +0000 (16:31 +0000)]

Style issues are resolved - the copy from JABA production release

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3576 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Dec 2010 16:22:56 +0000 (16:22 +0000)]

rename aacon task and resulting file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3574 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Dec 2010 14:29:57 +0000 (14:29 +0000)]

Moving a method from AACon to SequenceUtil

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3567 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Dec 2010 12:28:47 +0000 (12:28 +0000)]

AAConWS separate client to be removed later

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3565 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 21 Dec 2010 18:34:21 +0000 (18:34 +0000)]

Adding updated javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3556 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 21 Dec 2010 18:28:57 +0000 (18:28 +0000)]

Write javadoc for new datamodel classes , remove some incomplete staff

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3555 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 21 Dec 2010 18:13:36 +0000 (18:13 +0000)]

remove javadoc to update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3554 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 21 Dec 2010 15:02:12 +0000 (15:02 +0000)]

AAConWS further work

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3550 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 20 Dec 2010 13:56:37 +0000 (13:56 +0000)]

Further work on AAConWS

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3534 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 16 Dec 2010 11:30:06 +0000 (11:30 +0000)]

Gramma improved

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3501 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 9 Dec 2010 12:02:15 +0000 (12:02 +0000)]

More javadocs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3458 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 9 Dec 2010 11:42:55 +0000 (11:42 +0000)]

remove old javadoc to replace with new

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3457 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 3 Dec 2010 19:03:59 +0000 (19:03 +0000)]

Refactored client class to accomodate new WS interface and reduce the complexity

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3428 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 3 Dec 2010 16:19:10 +0000 (16:19 +0000)]

Preset limits for AACon

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3425 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 3 Dec 2010 16:12:13 +0000 (16:12 +0000)]

AAConWS further work and test cases

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3424 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 2 Dec 2010 18:16:47 +0000 (18:16 +0000)]

Better name for AACon WS test

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3417 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 2 Dec 2010 16:56:31 +0000 (16:56 +0000)]

AAConWS is working

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3416 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 29 Nov 2010 22:06:31 +0000 (22:06 +0000)]

AAConWS further work

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3407 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 29 Nov 2010 22:05:57 +0000 (22:05 +0000)]

AAConWS further work

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3406 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 15:08:11 +0000 (15:08 +0000)]

Get rid of unnecessary duplication of config files.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3392 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 14:27:11 +0000 (14:27 +0000)]

Changes from JWS2 branch concerning local execution and logging

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3389 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 14:25:26 +0000 (14:25 +0000)]

Add LoadBalancer and Limit testers from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3388 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 14:24:04 +0000 (14:24 +0000)]

Tests for AACon loader

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3387 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 13:13:11 +0000 (13:13 +0000)]

Dundee specific settings from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3385 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 13:12:35 +0000 (13:12 +0000)]

Dundee specific settings from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3384 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 13:07:42 +0000 (13:07 +0000)]

More work on AAConWS not finished yet!

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3383 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 13:04:56 +0000 (13:04 +0000)]

update from JWS2

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3382 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 13:03:38 +0000 (13:03 +0000)]

add images from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3381 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 13:02:54 +0000 (13:02 +0000)]

remove old images

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3380 e3abac25-378b-4346-85de-24260fe3988d

commit | commitdiff | tree

pvtroshin [Wed, 24 Nov 2010 13:00:10 +0000 (13:00 +0000)]

Add updated javadoc from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3379 e3abac25-378b-4346-85de-24260fe3988d

commit | commitdiff | tree

pvtroshin [Wed, 24 Nov 2010 12:59:05 +0000 (12:59 +0000)]

remove old javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3378 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 24 Nov 2010 12:48:49 +0000 (12:48 +0000)]

Adding changes from JWS2 branch. Fixes for Limit in particular

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3377 e3abac25-378b-4346-85de-24260fe3988d

commit | commitdiff | tree

pvtroshin [Wed, 24 Nov 2010 12:43:52 +0000 (12:43 +0000)]

More work on AAConWS not finished yet!

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3376 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 22 Nov 2010 15:38:01 +0000 (15:38 +0000)]

Java doc and package infos from JWS" branch. Also rethink of MSAWS interface in light of new web services e.g. AACon web service.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3345 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 22 Nov 2010 15:29:47 +0000 (15:29 +0000)]

Changes from JWS2 branch merged, mostly javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3344 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 22 Nov 2010 15:09:13 +0000 (15:09 +0000)]

Adding AAConWS

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3343 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 19 Nov 2010 16:02:09 +0000 (16:02 +0000)]

Add updated web site from JWS2 branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3338 e3abac25-378b-4346-85de-24260fe3988d

commit | commitdiff | tree

pvtroshin [Fri, 19 Nov 2010 15:50:01 +0000 (15:50 +0000)]

Remove old versions of web site

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3337 e3abac25-378b-4346-85de-24260fe3988d

commit | commitdiff | tree

pvtroshin [Thu, 19 Aug 2010 14:52:02 +0000 (14:52 +0000)]

updates to jaba2 from jaba release branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2922 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 19 Aug 2010 14:43:32 +0000 (14:43 +0000)]

updates to jaba2 from jaba release branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2921 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 19 Aug 2010 14:36:46 +0000 (14:36 +0000)]

updates to jaba2 from jaba release branch

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2919 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 19 Aug 2010 10:25:41 +0000 (10:25 +0000)]

Fixed version of Preset class from JABA_r1 branch (see bug JWS-19)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2907 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 26 Jul 2010 18:23:44 +0000 (18:23 +0000)]

Adding disembl wrapper

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2685 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 23 Jul 2010 13:15:01 +0000 (13:15 +0000)]

Jronn multi core support

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2666 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 22 Jul 2010 13:17:08 +0000 (13:17 +0000)]

Set number of thread for execution

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2652 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 22 Jul 2010 12:59:22 +0000 (12:59 +0000)]

Some refactoring

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2651 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 22 Jul 2010 12:22:47 +0000 (12:22 +0000)]

getStatistics test method fixed

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2650 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 22 Jul 2010 11:13:08 +0000 (11:13 +0000)]

Jronn tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2648 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 21 Jul 2010 16:56:53 +0000 (16:56 +0000)]

Add local engine properties back to version control

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2646 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 21 Jul 2010 16:27:56 +0000 (16:27 +0000)]

Add JRonn runner, tester, methods to parse jronn output files.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2638 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 20 Jul 2010 12:51:03 +0000 (12:51 +0000)]

Fix copyright header

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2612 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 20 Jul 2010 12:48:05 +0000 (12:48 +0000)]

Changes from JWS3 is merged
From now on JWS3 project should not contain any new data. To be deleted later

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2611 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 20 Jul 2010 11:44:34 +0000 (11:44 +0000)]

Next version of JABA

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2610 e3abac25-378b-4346-85de-24260fe3988d