jabaws.git
13 years agoBetter method for searching JAVA
pvtroshin [Wed, 6 Jul 2011 10:56:04 +0000 (10:56 +0000)]
Better method for searching JAVA

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4392 e3abac25-378b-4346-85de-24260fe3988d

13 years agoAdd servlet for public usage stats display.
pvtroshin [Fri, 1 Jul 2011 10:59:53 +0000 (10:59 +0000)]
Add servlet for public usage stats display.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4384 e3abac25-378b-4346-85de-24260fe3988d

13 years agoLimits are optional so correct tests
pvtroshin [Fri, 1 Jul 2011 09:42:12 +0000 (09:42 +0000)]
Limits are optional so correct tests

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4379 e3abac25-378b-4346-85de-24260fe3988d

13 years agoremove assert
pvtroshin [Fri, 1 Jul 2011 09:41:27 +0000 (09:41 +0000)]
remove assert

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4378 e3abac25-378b-4346-85de-24260fe3988d

13 years agoobtain JAVA executable path from the JAVA_HOME variable. Does not require path to...
pvtroshin [Thu, 30 Jun 2011 17:22:57 +0000 (17:22 +0000)]
obtain JAVA executable path from the JAVA_HOME variable. Does not require path to java for jar libraries.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4376 e3abac25-378b-4346-85de-24260fe3988d

13 years agoStat collector updates to work with JABA 2 input & output files
pvtroshin [Tue, 28 Jun 2011 16:54:59 +0000 (16:54 +0000)]
Stat collector updates to work with JABA 2 input & output files

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4366 e3abac25-378b-4346-85de-24260fe3988d

13 years agoClean database & small changes
pvtroshin [Tue, 28 Jun 2011 15:30:02 +0000 (15:30 +0000)]
Clean database & small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4363 e3abac25-378b-4346-85de-24260fe3988d

13 years agoExpose a few methods of Client and WSTester as API for Jim, new distributables.
pvtroshin [Mon, 27 Jun 2011 17:11:09 +0000 (17:11 +0000)]
Expose a few methods of Client and WSTester as API for Jim, new distributables.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4343 e3abac25-378b-4346-85de-24260fe3988d

13 years agoSlight refactoring
pvtroshin [Mon, 27 Jun 2011 16:40:37 +0000 (16:40 +0000)]
Slight refactoring

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4342 e3abac25-378b-4346-85de-24260fe3988d

13 years agoMinor tweaks
pvtroshin [Mon, 27 Jun 2011 15:33:31 +0000 (15:33 +0000)]
Minor tweaks

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4340 e3abac25-378b-4346-85de-24260fe3988d

13 years agoDundee compiled x86 binaries a few fixes for compile script
pvtroshin [Mon, 27 Jun 2011 14:55:27 +0000 (14:55 +0000)]
Dundee compiled x86 binaries a few fixes for compile script

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4338 e3abac25-378b-4346-85de-24260fe3988d

13 years agoBuild script improvements & updated util
pvtroshin [Mon, 27 Jun 2011 13:48:11 +0000 (13:48 +0000)]
Build script improvements & updated util

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4337 e3abac25-378b-4346-85de-24260fe3988d

13 years agoGeneralizing configuration prior to release.
pvtroshin [Mon, 27 Jun 2011 13:42:45 +0000 (13:42 +0000)]
Generalizing configuration prior to release.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4336 e3abac25-378b-4346-85de-24260fe3988d

13 years agoremove settings as separate settings no longer required
pvtroshin [Mon, 27 Jun 2011 13:29:22 +0000 (13:29 +0000)]
remove settings as separate settings no longer required
Add separate conf setting for engines and executables for dundee

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4334 e3abac25-378b-4346-85de-24260fe3988d

13 years agoGet rid of unused code
pvtroshin [Fri, 24 Jun 2011 23:32:23 +0000 (23:32 +0000)]
Get rid of unused code

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4329 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther simplification of build tasks
pvtroshin [Fri, 24 Jun 2011 17:17:29 +0000 (17:17 +0000)]
Further simplification of build tasks
get rid of biojava jar as it's not in use

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4328 e3abac25-378b-4346-85de-24260fe3988d

13 years agoupdate to compbio.utils and a few small changes
pvtroshin [Thu, 23 Jun 2011 14:15:51 +0000 (14:15 +0000)]
update to compbio.utils and a few small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4327 e3abac25-378b-4346-85de-24260fe3988d

13 years agobuild script updated
pvtroshin [Thu, 23 Jun 2011 14:11:27 +0000 (14:11 +0000)]
build script updated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4326 e3abac25-378b-4346-85de-24260fe3988d

13 years agolinks update (not checked though)
pvtroshin [Thu, 23 Jun 2011 14:10:48 +0000 (14:10 +0000)]
links update (not checked though)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4325 e3abac25-378b-4346-85de-24260fe3988d

13 years agocompbio projects sources
pvtroshin [Thu, 23 Jun 2011 14:10:02 +0000 (14:10 +0000)]
compbio projects sources

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4324 e3abac25-378b-4346-85de-24260fe3988d

13 years agopack binaries from folders into archives for easy download
pvtroshin [Thu, 23 Jun 2011 14:08:55 +0000 (14:08 +0000)]
pack binaries from folders into archives for easy download

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4323 e3abac25-378b-4346-85de-24260fe3988d

13 years agorelocated to website/archive folder
pvtroshin [Thu, 23 Jun 2011 14:04:51 +0000 (14:04 +0000)]
relocated to website/archive folder

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4322 e3abac25-378b-4346-85de-24260fe3988d

13 years agorelocate pre-compiled executables from binaries folder
pvtroshin [Thu, 23 Jun 2011 14:04:22 +0000 (14:04 +0000)]
relocate pre-compiled executables from binaries folder

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4321 e3abac25-378b-4346-85de-24260fe3988d

13 years agoremove old executables
pvtroshin [Thu, 23 Jun 2011 14:02:01 +0000 (14:02 +0000)]
remove old executables

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4320 e3abac25-378b-4346-85de-24260fe3988d

13 years agorename
pvtroshin [Thu, 23 Jun 2011 12:09:51 +0000 (12:09 +0000)]
rename

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4317 e3abac25-378b-4346-85de-24260fe3988d

13 years agoregenerated stubs & TODO
pvtroshin [Thu, 23 Jun 2011 10:56:00 +0000 (10:56 +0000)]
regenerated stubs & TODO

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4314 e3abac25-378b-4346-85de-24260fe3988d

13 years agoAdding latest test results
pvtroshin [Thu, 23 Jun 2011 09:47:41 +0000 (09:47 +0000)]
Adding latest test results

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4313 e3abac25-378b-4346-85de-24260fe3988d

13 years agoRemove old test from web site to replace with most recent
pvtroshin [Thu, 23 Jun 2011 09:46:17 +0000 (09:46 +0000)]
Remove old test from web site to replace with most recent

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4312 e3abac25-378b-4346-85de-24260fe3988d

13 years agoDisable failed tests
pvtroshin [Thu, 23 Jun 2011 09:34:27 +0000 (09:34 +0000)]
Disable failed tests

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4311 e3abac25-378b-4346-85de-24260fe3988d

13 years agomodification to enable globplot run on nanna (PYTHONPATH variable)
pvtroshin [Thu, 23 Jun 2011 09:16:47 +0000 (09:16 +0000)]
modification to enable globplot run on nanna (PYTHONPATH variable)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4310 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFixes to test cases
pvtroshin [Thu, 23 Jun 2011 09:15:05 +0000 (09:15 +0000)]
Fixes to test cases

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4309 e3abac25-378b-4346-85de-24260fe3988d

13 years agoannotate test with appropriate groups
pvtroshin [Wed, 22 Jun 2011 17:26:22 +0000 (17:26 +0000)]
annotate test with appropriate groups

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4308 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFix for testcases
pvtroshin [Wed, 22 Jun 2011 17:11:48 +0000 (17:11 +0000)]
Fix for testcases

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4307 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFixes for failed test cases (most was due to the data being used or problems with...
pvtroshin [Tue, 21 Jun 2011 17:17:08 +0000 (17:17 +0000)]
Fixes for failed test cases (most was due to the data being used or problems with test cases themselves)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4303 e3abac25-378b-4346-85de-24260fe3988d

13 years agocustom test suit xml
pvtroshin [Tue, 21 Jun 2011 15:44:23 +0000 (15:44 +0000)]
custom test suit xml

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4302 e3abac25-378b-4346-85de-24260fe3988d

13 years agotcoffee updated docs & todo
pvtroshin [Tue, 21 Jun 2011 14:48:37 +0000 (14:48 +0000)]
tcoffee updated docs & todo

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4301 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIA32 and x64 tcoffee binaries are added
pvtroshin [Tue, 21 Jun 2011 14:47:39 +0000 (14:47 +0000)]
IA32 and x64 tcoffee binaries are added

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4300 e3abac25-378b-4346-85de-24260fe3988d

13 years agogetting rid of ambiguous documentation folder. all prog_doc are now stored in website...
pvtroshin [Tue, 21 Jun 2011 14:34:00 +0000 (14:34 +0000)]
getting rid of ambiguous documentation folder. all prog_doc are now stored in website/prog_docs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4299 e3abac25-378b-4346-85de-24260fe3988d

13 years agonew version of tcoffee 8.99 not yet compiled for ia32 linux (currently compiled for...
pvtroshin [Tue, 21 Jun 2011 14:25:36 +0000 (14:25 +0000)]
new version of tcoffee 8.99 not yet compiled for ia32 linux (currently compiled for dundee cluster)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4298 e3abac25-378b-4346-85de-24260fe3988d

13 years agoremoving tcoffee to update
pvtroshin [Tue, 21 Jun 2011 14:14:44 +0000 (14:14 +0000)]
removing tcoffee to update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4297 e3abac25-378b-4346-85de-24260fe3988d

13 years agoRevert multithreading support for mafft as it does not seem to work
pvtroshin [Tue, 21 Jun 2011 12:29:25 +0000 (12:29 +0000)]
Revert multithreading support for mafft as it does not seem to work

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4296 e3abac25-378b-4346-85de-24260fe3988d

13 years agoRevert multithreading support for mafft as it does not seem to work
pvtroshin [Tue, 21 Jun 2011 12:29:09 +0000 (12:29 +0000)]
Revert multithreading support for mafft as it does not seem to work

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4295 e3abac25-378b-4346-85de-24260fe3988d

13 years agoGet rind of NativeClusterJob interface as pretty much every jobs best to use some...
pvtroshin [Tue, 21 Jun 2011 12:06:02 +0000 (12:06 +0000)]
Get rind of NativeClusterJob interface as pretty much every jobs best to use some cluster settings, and they are simply defined in the executable conf file and passed by the SkeletalExecutable.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4294 e3abac25-378b-4346-85de-24260fe3988d

13 years agomafft new location
pvtroshin [Tue, 21 Jun 2011 11:35:08 +0000 (11:35 +0000)]
mafft new location

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4293 e3abac25-378b-4346-85de-24260fe3988d

13 years agoChanges to accomodate new version's of mafft packaging
pvtroshin [Tue, 21 Jun 2011 11:34:53 +0000 (11:34 +0000)]
Changes to accomodate new version's of mafft packaging

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4292 e3abac25-378b-4346-85de-24260fe3988d

13 years agoadd IA32 linux muscle binary
pvtroshin [Tue, 21 Jun 2011 11:33:39 +0000 (11:33 +0000)]
add IA32 linux muscle binary

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4291 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIA32 mafft executables
pvtroshin [Tue, 21 Jun 2011 11:10:02 +0000 (11:10 +0000)]
IA32 mafft executables

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4290 e3abac25-378b-4346-85de-24260fe3988d

13 years agoNew Mafft binaries for 32 bit linux system
pvtroshin [Tue, 21 Jun 2011 10:58:50 +0000 (10:58 +0000)]
New Mafft binaries for 32 bit linux system

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4289 e3abac25-378b-4346-85de-24260fe3988d

13 years agoNew Mafft binaries for 64 bit linux system
pvtroshin [Tue, 21 Jun 2011 10:57:18 +0000 (10:57 +0000)]
New Mafft binaries for 64 bit linux system

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4288 e3abac25-378b-4346-85de-24260fe3988d

13 years agoremove mafft extensions - we do not support them
pvtroshin [Tue, 21 Jun 2011 10:27:17 +0000 (10:27 +0000)]
remove mafft extensions - we do not support them

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4287 e3abac25-378b-4346-85de-24260fe3988d

13 years agonew mafft v 6.857 with extensions
pvtroshin [Tue, 21 Jun 2011 10:02:51 +0000 (10:02 +0000)]
new mafft v 6.857 with extensions

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4286 e3abac25-378b-4346-85de-24260fe3988d

13 years agoRemoving old version of mafft to replace with the new
pvtroshin [Tue, 21 Jun 2011 10:01:52 +0000 (10:01 +0000)]
Removing old version of mafft to replace with the new

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4285 e3abac25-378b-4346-85de-24260fe3988d

13 years agotodo update
pvtroshin [Mon, 20 Jun 2011 16:43:34 +0000 (16:43 +0000)]
todo update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4284 e3abac25-378b-4346-85de-24260fe3988d

13 years agonew version of muscle 3.8.31
pvtroshin [Mon, 20 Jun 2011 16:37:41 +0000 (16:37 +0000)]
new version of muscle 3.8.31
binaries for various systems, sources, help file and configuration is updated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4283 e3abac25-378b-4346-85de-24260fe3988d

13 years agotodos
pvtroshin [Fri, 17 Jun 2011 16:17:57 +0000 (16:17 +0000)]
todos

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4282 e3abac25-378b-4346-85de-24260fe3988d

13 years agoWeb services refactoring & bug fixing
pvtroshin [Fri, 17 Jun 2011 15:45:17 +0000 (15:45 +0000)]
Web services refactoring & bug fixing

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4281 e3abac25-378b-4346-85de-24260fe3988d

13 years agoRefactoring of all SequenceAnnotation web services
pvtroshin [Fri, 17 Jun 2011 14:06:30 +0000 (14:06 +0000)]
Refactoring of all SequenceAnnotation web services
New version of Metro
Definition for IUPred exec
Stubs regenerated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4280 e3abac25-378b-4346-85de-24260fe3988d

13 years agotodos
pvtroshin [Thu, 16 Jun 2011 16:48:52 +0000 (16:48 +0000)]
todos

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4279 e3abac25-378b-4346-85de-24260fe3988d

13 years agoBinaries relocation
pvtroshin [Thu, 16 Jun 2011 16:46:41 +0000 (16:46 +0000)]
Binaries relocation

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4278 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIUPred for windows
pvtroshin [Thu, 16 Jun 2011 16:18:33 +0000 (16:18 +0000)]
IUPred for windows

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4277 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIntegrating IUPredWS
pvtroshin [Thu, 16 Jun 2011 14:40:43 +0000 (14:40 +0000)]
Integrating IUPredWS

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4276 e3abac25-378b-4346-85de-24260fe3988d

13 years agoA few more tests for IUPred
pvtroshin [Thu, 16 Jun 2011 14:30:04 +0000 (14:30 +0000)]
A few more tests for IUPred

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4275 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIUPred final touches. All test cases pass
pvtroshin [Thu, 16 Jun 2011 14:22:06 +0000 (14:22 +0000)]
IUPred final touches. All test cases pass

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4274 e3abac25-378b-4346-85de-24260fe3988d

13 years agoImprovements to the code
pvtroshin [Thu, 16 Jun 2011 13:35:08 +0000 (13:35 +0000)]
Improvements to the code

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4273 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIUpred integration
pvtroshin [Thu, 16 Jun 2011 13:13:19 +0000 (13:13 +0000)]
IUpred integration

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4272 e3abac25-378b-4346-85de-24260fe3988d

13 years agoModified IUPred to read multiple fasta as input
pvtroshin [Thu, 16 Jun 2011 13:10:17 +0000 (13:10 +0000)]
Modified IUPred to read multiple fasta as input

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4271 e3abac25-378b-4346-85de-24260fe3988d

13 years agoAdding XML executable description for IUPred
pvtroshin [Tue, 14 Jun 2011 17:26:54 +0000 (17:26 +0000)]
Adding XML executable description for IUPred

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4266 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIUPred wrapper, tester and new binary for X64 linux systems
pvtroshin [Tue, 14 Jun 2011 17:12:12 +0000 (17:12 +0000)]
IUPred wrapper, tester and new binary for X64 linux systems

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4265 e3abac25-378b-4346-85de-24260fe3988d

13 years agoIUPred result readers. IUpred binaries compilation scripts. IUpred executable descrip...
pvtroshin [Tue, 14 Jun 2011 15:39:19 +0000 (15:39 +0000)]
IUPred result readers. IUpred binaries compilation scripts. IUpred executable description. IUPred output files for testing

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4263 e3abac25-378b-4346-85de-24260fe3988d

13 years agoAdding IUPred executables for the new web service
pvtroshin [Mon, 13 Jun 2011 15:50:35 +0000 (15:50 +0000)]
Adding IUPred executables for the new web service

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4262 e3abac25-378b-4346-85de-24260fe3988d

13 years agoCommand line options are described and added to the client. Registry is modified...
pvtroshin [Mon, 13 Jun 2011 15:01:09 +0000 (15:01 +0000)]
Command line options are described and added to the client. Registry is modified to perform test after 24 hours from last test

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4261 e3abac25-378b-4346-85de-24260fe3988d

13 years agoJWS2 client
pvtroshin [Wed, 8 Jun 2011 17:42:15 +0000 (17:42 +0000)]
JWS2 client

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4238 e3abac25-378b-4346-85de-24260fe3988d

13 years agoJWS2 client
pvtroshin [Wed, 8 Jun 2011 17:36:31 +0000 (17:36 +0000)]
JWS2 client

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4237 e3abac25-378b-4346-85de-24260fe3988d

13 years ago More work to disorder prediction client & services.
pvtroshin [Wed, 8 Jun 2011 16:03:25 +0000 (16:03 +0000)]
 More work to disorder prediction client & services.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4236 e3abac25-378b-4346-85de-24260fe3988d

13 years agoWeb service stubs are regenerated to incorporate new the methods. Excveption handling...
pvtroshin [Wed, 8 Jun 2011 12:49:27 +0000 (12:49 +0000)]
Web service stubs are regenerated to incorporate new the methods. Excveption handling improved for tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4231 e3abac25-378b-4346-85de-24260fe3988d

13 years agoWStester & registry are completed
pvtroshin [Wed, 8 Jun 2011 10:09:43 +0000 (10:09 +0000)]
WStester & registry are completed

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4230 e3abac25-378b-4346-85de-24260fe3988d

13 years agofurther work on registry & WSTester nearly there
pvtroshin [Tue, 7 Jun 2011 16:47:05 +0000 (16:47 +0000)]
further work on registry & WSTester nearly there

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4229 e3abac25-378b-4346-85de-24260fe3988d

13 years agoAdding registry web service and changes to WStester and JWS2Client code. Bugs in...
pvtroshin [Mon, 6 Jun 2011 18:16:36 +0000 (18:16 +0000)]
Adding registry web service and changes to WStester and JWS2Client code. Bugs in input/ouput setup for a few web services fixed

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4223 e3abac25-378b-4346-85de-24260fe3988d

13 years agoexclude cancelled jobs from incomplete
pvtroshin [Fri, 3 Jun 2011 12:59:24 +0000 (12:59 +0000)]
exclude cancelled jobs from incomplete

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4214 e3abac25-378b-4346-85de-24260fe3988d

13 years agoChanges to return type of Executable.getType() method to make it compile with Oracle...
pvtroshin [Wed, 1 Jun 2011 13:19:37 +0000 (13:19 +0000)]
Changes to return type of Executable.getType() method to make it compile with Oracle javac.
A few modifications to statistics package.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4201 e3abac25-378b-4346-85de-24260fe3988d

13 years agogit-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4200 e3abac25...
pvtroshin [Tue, 31 May 2011 16:54:27 +0000 (16:54 +0000)]
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4200 e3abac25-378b-4346-85de-24260fe3988d

13 years agoA bug fix, help text for stat jsp pages and style improvements
pvtroshin [Tue, 31 May 2011 16:53:34 +0000 (16:53 +0000)]
A bug fix, help text for stat jsp pages and style improvements

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4199 e3abac25-378b-4346-85de-24260fe3988d

13 years agoLatest web site update from JABA_r1 r. 4152
pvtroshin [Tue, 31 May 2011 14:26:36 +0000 (14:26 +0000)]
Latest web site update from JABA_r1 r. 4152

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4196 e3abac25-378b-4346-85de-24260fe3988d

13 years agoStat collection and display done
pvtroshin [Tue, 31 May 2011 12:27:37 +0000 (12:27 +0000)]
Stat collection and display done

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4195 e3abac25-378b-4346-85de-24260fe3988d

13 years agoTODO
pvtroshin [Mon, 30 May 2011 17:23:42 +0000 (17:23 +0000)]
TODO

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4194 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work to enable stat collection and display
pvtroshin [Mon, 30 May 2011 17:17:34 +0000 (17:17 +0000)]
Further work to enable stat collection and display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4193 e3abac25-378b-4346-85de-24260fe3988d

13 years agoNew properties to work with work directories
pvtroshin [Mon, 30 May 2011 17:16:32 +0000 (17:16 +0000)]
New properties to work with work directories

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4192 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Mon, 30 May 2011 12:15:28 +0000 (12:15 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4190 e3abac25-378b-4346-85de-24260fe3988d

13 years agonew properties for stat collector conf
pvtroshin [Fri, 27 May 2011 18:11:30 +0000 (18:11 +0000)]
new properties for stat collector conf

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4185 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display - improvements to stat collector
pvtroshin [Fri, 27 May 2011 18:11:08 +0000 (18:11 +0000)]
Further work on statistics display - improvements to stat collector

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4184 e3abac25-378b-4346-85de-24260fe3988d

13 years agogit-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4179 e3abac25...
pvtroshin [Thu, 26 May 2011 17:16:01 +0000 (17:16 +0000)]
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4179 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Thu, 26 May 2011 17:15:53 +0000 (17:15 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4178 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Thu, 26 May 2011 17:15:41 +0000 (17:15 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4177 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Thu, 26 May 2011 16:12:19 +0000 (16:12 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4176 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Thu, 26 May 2011 15:03:35 +0000 (15:03 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4175 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Thu, 26 May 2011 15:03:23 +0000 (15:03 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4174 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Thu, 26 May 2011 15:02:54 +0000 (15:02 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4173 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Wed, 25 May 2011 17:43:31 +0000 (17:43 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4166 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Wed, 25 May 2011 17:43:20 +0000 (17:43 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4165 e3abac25-378b-4346-85de-24260fe3988d

13 years agoFurther work on statistics display
pvtroshin [Wed, 25 May 2011 17:43:07 +0000 (17:43 +0000)]
Further work on statistics display

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4164 e3abac25-378b-4346-85de-24260fe3988d