pmarguerite [Fri, 15 Dec 2006 15:58:04 +0000 (15:58 +0000)]
SessionURN fix asFile method now create the File object from the URI
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@326
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:47:37 +0000 (15:47 +0000)]
Added TestSessionURN: to test the creation of a sessionURN and to retrieve a correct file from it.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@325
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:46:51 +0000 (15:46 +0000)]
SessionUrn: modified to scope with windows (space ... in file name. Use URI instead of URL
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@324
be28352e-c001-0410-b1a7-
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imilne [Fri, 15 Dec 2006 15:09:28 +0000 (15:09 +0000)]
Modified CustomMessage.java so that tabs are used to separate message elements rather than underscores.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@323
be28352e-c001-0410-b1a7-
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imilne [Fri, 15 Dec 2006 15:08:57 +0000 (15:08 +0000)]
Modified MouseOverMessage.java so that tabs are used to separate message elements rather than underscores.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@322
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:07:30 +0000 (15:07 +0000)]
SessionHandle: added equals method to compare SessionHandles, based on the sessionUrn
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@321
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:06:25 +0000 (15:06 +0000)]
amsasSession: added addClient and removeClient to add and remove a client to/from the session client list.
Attached (as attribute) a SessionManager
Removes the currentSession of the active session list, if the client to removed is the last one of the list
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@320
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:03:10 +0000 (15:03 +0000)]
Moves sessionFile management to SimpleSessionManager calling SessionsFile class (dealing directly with the file)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@319
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:01:43 +0000 (15:01 +0000)]
SimpleClient: remove client of the session client list when closing/finalizing (finalizeClient method)
added get_session() to retrieve current vamsas session
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@318
be28352e-c001-0410-b1a7-
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imilne [Fri, 15 Dec 2006 13:53:29 +0000 (13:53 +0000)]
Added comment about handling messages in the GUI event thread.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@317
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Fri, 15 Dec 2006 13:49:52 +0000 (13:49 +0000)]
Added getter methods to the MouseOverMessage class.
Added code to MouseOverMessage.java so it can reconstruct the message object from the raw data stream.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@316
be28352e-c001-0410-b1a7-
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jprocter [Fri, 15 Dec 2006 12:05:06 +0000 (12:05 +0000)]
internal flags for added and updated since last read for Vobjects tested with ArchiveClient code.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@315
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Fri, 15 Dec 2006 11:52:41 +0000 (11:52 +0000)]
Checked in the document update handler interface and a concrete implementation of it (that contains empty methods).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@314
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Fri, 15 Dec 2006 11:27:30 +0000 (11:27 +0000)]
Commented out all logging messages from the pick code to speed up message transfer.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@313
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 15 Dec 2006 11:12:32 +0000 (11:12 +0000)]
added a getter for the pickhandler interface in IClient
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@312
be28352e-c001-0410-b1a7-
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jprocter [Fri, 15 Dec 2006 11:10:55 +0000 (11:10 +0000)]
added usage notes about removing specific object bindings
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@311
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 15 Dec 2006 11:07:07 +0000 (11:07 +0000)]
extracted from the jalview.io.VamsasDatastore bindjv2obj and associated methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@310
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 09:24:24 +0000 (09:24 +0000)]
SessionUrn: added a constructor to build a SessionURN from a String
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@309
be28352e-c001-0410-b1a7-
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jprocter [Fri, 15 Dec 2006 09:04:32 +0000 (09:04 +0000)]
javadoc not updated for refactored packages.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@308
be28352e-c001-0410-b1a7-
c7978e42abec
pmarguerite [Thu, 14 Dec 2006 21:18:21 +0000 (21:18 +0000)]
created setURN to generated sessionUrn from a urn as String. Allow to be replaced by an inheriting class
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@307
be28352e-c001-0410-b1a7-
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pmarguerite [Thu, 14 Dec 2006 21:15:09 +0000 (21:15 +0000)]
SessionHandle: made SessionHandle serializable to be able to store it into file
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@306
be28352e-c001-0410-b1a7-
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pmarguerite [Thu, 14 Dec 2006 21:14:12 +0000 (21:14 +0000)]
SessionHandle: made SessionHandle serializable to be able to store it into file
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@305
be28352e-c001-0410-b1a7-
c7978e42abec
pmarguerite [Thu, 14 Dec 2006 21:13:31 +0000 (21:13 +0000)]
VamsasSession Fix session constructor/initialisation if the session directory already exists
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@304
be28352e-c001-0410-b1a7-
c7978e42abec
pmarguerite [Thu, 14 Dec 2006 21:13:03 +0000 (21:13 +0000)]
SimpleClientFactory Added support to create a IClient for a given Session to a given session URN
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@303
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Thu, 14 Dec 2006 19:29:20 +0000 (19:29 +0000)]
Picking API now has message classes and basic implementation of interfaces (for its own implementation and client-app message handling implementation).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@302
be28352e-c001-0410-b1a7-
c7978e42abec
pmarguerite [Thu, 14 Dec 2006 19:21:21 +0000 (19:21 +0000)]
Fix session constructor/initialisation if the session directory already exists
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@301
be28352e-c001-0410-b1a7-
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jprocter [Thu, 14 Dec 2006 19:07:00 +0000 (19:07 +0000)]
changed vamsasDocument and vamsas types namespaces.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@300
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:58:50 +0000 (18:58 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@299
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:58:27 +0000 (18:58 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@298
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:57:20 +0000 (18:57 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@297
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:52:17 +0000 (18:52 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@296
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:51:35 +0000 (18:51 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@295
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:50:31 +0000 (18:50 +0000)]
refactoring org to uk - never use f**ng eclipse
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@294
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:49:23 +0000 (18:49 +0000)]
refactoring org to uk - never use f**ng eclipse
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@293
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:49:07 +0000 (18:49 +0000)]
refactoring org to uk - never use f**ng eclipse
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@292
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:48:08 +0000 (18:48 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@291
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:47:51 +0000 (18:47 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@290
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:47:18 +0000 (18:47 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@289
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:43:00 +0000 (18:43 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@288
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:42:43 +0000 (18:42 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@287
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:41:20 +0000 (18:41 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@286
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:40:16 +0000 (18:40 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@285
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:39:48 +0000 (18:39 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@284
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:27:53 +0000 (18:27 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@283
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:27:16 +0000 (18:27 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@282
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:26:15 +0000 (18:26 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@281
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:20:51 +0000 (18:20 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@280
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:18:43 +0000 (18:18 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@279
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:18:26 +0000 (18:18 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@278
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:17:24 +0000 (18:17 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@277
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:16:54 +0000 (18:16 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@276
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:16:15 +0000 (18:16 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@275
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:16:14 +0000 (18:16 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@274
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:08:11 +0000 (18:08 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@273
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:05:40 +0000 (18:05 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@272
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:54:15 +0000 (17:54 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@271
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:52:40 +0000 (17:52 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@270
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:52:15 +0000 (17:52 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@269
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:51:17 +0000 (17:51 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@268
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:50:39 +0000 (17:50 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@267
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:50:38 +0000 (17:50 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@266
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:44:21 +0000 (17:44 +0000)]
broken refactoring
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@265
be28352e-c001-0410-b1a7-
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jprocter [Thu, 14 Dec 2006 17:42:54 +0000 (17:42 +0000)]
backtrack
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@264
be28352e-c001-0410-b1a7-
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jprocter [Thu, 14 Dec 2006 17:15:29 +0000 (17:15 +0000)]
refactored from org.vamsas to uk.ac.vamsas
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@263
be28352e-c001-0410-b1a7-
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jprocter [Thu, 14 Dec 2006 17:11:07 +0000 (17:11 +0000)]
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@262
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:08:32 +0000 (17:08 +0000)]
refactored from org.vamsas to uk.ac.vamsas
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@261
be28352e-c001-0410-b1a7-
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jprocter [Thu, 14 Dec 2006 16:40:55 +0000 (16:40 +0000)]
remove old ebi packages
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@260
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 16:21:49 +0000 (16:21 +0000)]
quick commit before refactoring
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@259
be28352e-c001-0410-b1a7-
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pmarguerite [Thu, 14 Dec 2006 16:19:27 +0000 (16:19 +0000)]
added SimpleClientFactory implementation and new class SessionsFile to deal with the list of active sessions
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@258
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Thu, 14 Dec 2006 16:15:36 +0000 (16:15 +0000)]
Updated docs and logging for the picking api.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@257
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 12:26:59 +0000 (12:26 +0000)]
modifiable attribute is now a string rather than a boolean. See 'locks' type documentation in vamsas.xsd
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@256
be28352e-c001-0410-b1a7-
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imilne [Thu, 14 Dec 2006 11:56:17 +0000 (11:56 +0000)]
Picking code updated with full basic implementation of message sending and server restart code.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@255
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 10:25:25 +0000 (10:25 +0000)]
refactored mapping to mapList type in both DbRef and SeqType object.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@254
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Wed, 13 Dec 2006 17:03:37 +0000 (17:03 +0000)]
First check-in of the picking api.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@253
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 13 Dec 2006 16:45:02 +0000 (16:45 +0000)]
IObjectUpdate interface introduction.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@252
be28352e-c001-0410-b1a7-
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amwaterhouse [Wed, 13 Dec 2006 16:32:21 +0000 (16:32 +0000)]
Mapping element added
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@251
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Dec 2006 23:52:36 +0000 (23:52 +0000)]
first round of todos for codefest
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@250
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Dec 2006 23:49:50 +0000 (23:49 +0000)]
basic ideas for per-object update interface
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@249
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Dec 2006 23:43:21 +0000 (23:43 +0000)]
added todo for making library automatically construct the user handle
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@248
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Dec 2006 11:02:13 +0000 (11:02 +0000)]
new stuff for vamsas hack.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@247
be28352e-c001-0410-b1a7-
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jprocter [Sun, 17 Sep 2006 14:42:32 +0000 (14:42 +0000)]
show vamsasId for aligments.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@246
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jprocter [Sun, 17 Sep 2006 14:42:13 +0000 (14:42 +0000)]
tidier file locks - lock file is removed on JVM exit.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@245
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jprocter [Sun, 17 Sep 2006 14:41:31 +0000 (14:41 +0000)]
ensured that hash binding vorbaIds is passed to client document object for vorba object lookup methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@244
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jprocter [Wed, 13 Sep 2006 14:25:32 +0000 (14:25 +0000)]
jalview'esque vamsas session example for org.vamsas.test.simpleclient.ArchiveClient test model.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@243
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jprocter [Wed, 13 Sep 2006 14:24:57 +0000 (14:24 +0000)]
bug fix to ensure valid and vorbaIds are generated and stored in vamsas object model
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@242
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jprocter [Tue, 12 Sep 2006 10:20:55 +0000 (10:20 +0000)]
objects regenerated with valid schema (without excess id field cancelled in previous commit)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@241
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jprocter [Tue, 12 Sep 2006 10:19:48 +0000 (10:19 +0000)]
removed excess id field (cancels previous commit)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@240
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jprocter [Tue, 12 Sep 2006 10:07:11 +0000 (10:07 +0000)]
bugfixed org.vamsas.test.simpleclient.ArchiveClient and made VorbaId mechanism more rigorous.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@239
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jprocter [Tue, 12 Sep 2006 10:04:04 +0000 (10:04 +0000)]
added id for RangeAnnotation types.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@238
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imilne [Fri, 8 Sep 2006 12:12:01 +0000 (12:12 +0000)]
Added a javadoc Ant build task.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@237
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jprocter [Wed, 6 Sep 2006 13:43:37 +0000 (13:43 +0000)]
added V_parent reference to parent object in document.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@236
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jprocter [Tue, 5 Sep 2006 09:50:42 +0000 (09:50 +0000)]
enum constants for Glyph types.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@235
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jprocter [Fri, 1 Sep 2006 17:02:21 +0000 (17:02 +0000)]
updated test cases for spring 2006 schema, and major debug of locking system
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@234
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jprocter [Fri, 1 Sep 2006 17:01:10 +0000 (17:01 +0000)]
added some example logging configs
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@233
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jprocter [Fri, 1 Sep 2006 17:00:47 +0000 (17:00 +0000)]
updated binding with castor-1.0.2
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@232
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jprocter [Fri, 1 Sep 2006 16:57:38 +0000 (16:57 +0000)]
Java binding for new document schema (from 1st hinxton vamsas Meeting)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@231
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jprocter [Wed, 24 May 2006 13:32:33 +0000 (13:32 +0000)]
introducing Lock File based locking (for portability) - part implemented.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@230
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jprocter [Wed, 24 May 2006 13:30:43 +0000 (13:30 +0000)]
changes propagated from Provenance.App entry.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@229
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jprocter [Wed, 24 May 2006 13:30:25 +0000 (13:30 +0000)]
changes propagated from Provenance.App entry.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@228
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jprocter [Mon, 22 May 2006 16:31:32 +0000 (16:31 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@227
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git://source.jalview.org / vamsas.git / log