jprocter [Sun, 17 Sep 2006 14:41:31 +0000 (14:41 +0000)]
ensured that hash binding vorbaIds is passed to client document object for vorba object lookup methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@244
be28352e-c001-0410-b1a7-
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jprocter [Wed, 13 Sep 2006 14:25:32 +0000 (14:25 +0000)]
jalview'esque vamsas session example for org.vamsas.test.simpleclient.ArchiveClient test model.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@243
be28352e-c001-0410-b1a7-
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jprocter [Wed, 13 Sep 2006 14:24:57 +0000 (14:24 +0000)]
bug fix to ensure valid and vorbaIds are generated and stored in vamsas object model
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@242
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Sep 2006 10:20:55 +0000 (10:20 +0000)]
objects regenerated with valid schema (without excess id field cancelled in previous commit)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@241
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Sep 2006 10:19:48 +0000 (10:19 +0000)]
removed excess id field (cancels previous commit)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@240
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Sep 2006 10:07:11 +0000 (10:07 +0000)]
bugfixed org.vamsas.test.simpleclient.ArchiveClient and made VorbaId mechanism more rigorous.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@239
be28352e-c001-0410-b1a7-
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jprocter [Tue, 12 Sep 2006 10:04:04 +0000 (10:04 +0000)]
added id for RangeAnnotation types.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@238
be28352e-c001-0410-b1a7-
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imilne [Fri, 8 Sep 2006 12:12:01 +0000 (12:12 +0000)]
Added a javadoc Ant build task.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@237
be28352e-c001-0410-b1a7-
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jprocter [Wed, 6 Sep 2006 13:43:37 +0000 (13:43 +0000)]
added V_parent reference to parent object in document.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@236
be28352e-c001-0410-b1a7-
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jprocter [Tue, 5 Sep 2006 09:50:42 +0000 (09:50 +0000)]
enum constants for Glyph types.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@235
be28352e-c001-0410-b1a7-
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jprocter [Fri, 1 Sep 2006 17:02:21 +0000 (17:02 +0000)]
updated test cases for spring 2006 schema, and major debug of locking system
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@234
be28352e-c001-0410-b1a7-
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jprocter [Fri, 1 Sep 2006 17:01:10 +0000 (17:01 +0000)]
added some example logging configs
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@233
be28352e-c001-0410-b1a7-
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jprocter [Fri, 1 Sep 2006 17:00:47 +0000 (17:00 +0000)]
updated binding with castor-1.0.2
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@232
be28352e-c001-0410-b1a7-
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jprocter [Fri, 1 Sep 2006 16:57:38 +0000 (16:57 +0000)]
Java binding for new document schema (from 1st hinxton vamsas Meeting)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@231
be28352e-c001-0410-b1a7-
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jprocter [Wed, 24 May 2006 13:32:33 +0000 (13:32 +0000)]
introducing Lock File based locking (for portability) - part implemented.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@230
be28352e-c001-0410-b1a7-
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jprocter [Wed, 24 May 2006 13:30:43 +0000 (13:30 +0000)]
changes propagated from Provenance.App entry.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@229
be28352e-c001-0410-b1a7-
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jprocter [Wed, 24 May 2006 13:30:25 +0000 (13:30 +0000)]
changes propagated from Provenance.App entry.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@228
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 16:31:32 +0000 (16:31 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@227
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 16:29:12 +0000 (16:29 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@226
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 16:27:33 +0000 (16:27 +0000)]
fixed loss of plural alignmentannotation in new schema version
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@225
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 16:17:30 +0000 (16:17 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@224
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 15:59:40 +0000 (15:59 +0000)]
autogenerated java classes for current schema
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@223
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 15:50:38 +0000 (15:50 +0000)]
added 'attachment' element example.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@222
be28352e-c001-0410-b1a7-
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jprocter [Mon, 22 May 2006 15:50:20 +0000 (15:50 +0000)]
post-meeting refinements and commenting.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@221
be28352e-c001-0410-b1a7-
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jprocter [Fri, 19 May 2006 16:53:59 +0000 (16:53 +0000)]
still refactoring the rangeType and features/annotation elements.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@220
be28352e-c001-0410-b1a7-
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jprocter [Thu, 18 May 2006 17:01:14 +0000 (17:01 +0000)]
current vamsas type document. Still being worked on and refined.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@219
be28352e-c001-0410-b1a7-
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jprocter [Mon, 27 Mar 2006 12:18:18 +0000 (12:18 +0000)]
added registration/object retrieval methods to ClientDoc.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@218
be28352e-c001-0410-b1a7-
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jprocter [Mon, 27 Mar 2006 12:17:43 +0000 (12:17 +0000)]
Incorrect bounds for Provenance type in Dataset.DatasetAnnotations. (could have an array of provenance arrays).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@217
be28352e-c001-0410-b1a7-
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jprocter [Mon, 27 Mar 2006 11:46:41 +0000 (11:46 +0000)]
Incorrect bounds for Provenance type in Dataset.DatasetAnnotations. (could have an array of provenance arrays).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@216
be28352e-c001-0410-b1a7-
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jprocter [Sun, 26 Mar 2006 17:08:41 +0000 (17:08 +0000)]
debugged the runnable main for ArchiveClient. ClientDoc provides api returned by ArchiveClient.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@215
be28352e-c001-0410-b1a7-
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jprocter [Sun, 26 Mar 2006 17:07:33 +0000 (17:07 +0000)]
latest version is Beta. but we might change this :)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@214
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jprocter [Sun, 26 Mar 2006 17:06:51 +0000 (17:06 +0000)]
added new constructor and File object accessor to make VamsasFile usable with VamsasArchive.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@213
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 19:16:26 +0000 (19:16 +0000)]
fixed (hopefully) locking/read problems in test.simpleclient.VamsasArchive/Watcher classes and commented out the RandomAccess based reading/writing for mo.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@212
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 19:13:22 +0000 (19:13 +0000)]
fixed leaky lock (answers todo about verifying that channel.close() should be called before lock.release())
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@211
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 19:04:20 +0000 (19:04 +0000)]
new target - jar, and added an 'exclude' for Pierre's java5 vamav code (for the moment)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@210
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 19:03:00 +0000 (19:03 +0000)]
simple test of locked IO based on ArchiveWatcher. Extend this to quickly incorporate vamsas dataset updates into a program (? really)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@209
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 19:01:45 +0000 (19:01 +0000)]
commented out stream constructor for vamsasArchive.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@208
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 24 Mar 2006 15:40:31 +0000 (15:40 +0000)]
vamsas api example classes - AstexViewer@MSD-EBI
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@207
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 10:21:36 +0000 (10:21 +0000)]
developing streamReader tests.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@206
be28352e-c001-0410-b1a7-
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jprocter [Thu, 23 Mar 2006 19:27:57 +0000 (19:27 +0000)]
still dealing with JarInputStream issues.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@205
be28352e-c001-0410-b1a7-
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jprocter [Thu, 23 Mar 2006 14:13:46 +0000 (14:13 +0000)]
fixed exception when trying to cancel unwritten archives.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@204
be28352e-c001-0410-b1a7-
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jprocter [Thu, 23 Mar 2006 14:10:51 +0000 (14:10 +0000)]
debug output - just incase strange things are happening when trying to read jars
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@203
be28352e-c001-0410-b1a7-
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pmarguerite [Thu, 23 Mar 2006 13:48:35 +0000 (13:48 +0000)]
fix call of the argument parsing - '!' missing
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@202
be28352e-c001-0410-b1a7-
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jprocter [Thu, 23 Mar 2006 11:41:09 +0000 (11:41 +0000)]
locking for windows (XP) partly debugged. ClientsFileTest watchers do not behave perfectly yet.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@201
be28352e-c001-0410-b1a7-
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pmarguerite [Wed, 22 Mar 2006 17:29:00 +0000 (17:29 +0000)]
'!' missing for testing if the session directory is readeable.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@200
be28352e-c001-0410-b1a7-
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jprocter [Wed, 22 Mar 2006 17:04:50 +0000 (17:04 +0000)]
more fixes for clientdocument/simpleclient. Testign the vamsasArchive reader and sessionfile mechanism (windows patches)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@199
be28352e-c001-0410-b1a7-
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jprocter [Wed, 22 Mar 2006 14:12:54 +0000 (14:12 +0000)]
finished the Appdata/ClientDocument update mechanism. Untested!
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@198
be28352e-c001-0410-b1a7-
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jprocter [Wed, 22 Mar 2006 14:12:12 +0000 (14:12 +0000)]
added new method for writing an AppData jar entry directly from an InputStream.
Also reprioritised some TODOs and made comments
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@197
be28352e-c001-0410-b1a7-
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jprocter [Tue, 21 Mar 2006 17:18:41 +0000 (17:18 +0000)]
intermediate cjeckin - nfs woes!
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@196
be28352e-c001-0410-b1a7-
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jprocter [Tue, 21 Mar 2006 11:59:49 +0000 (11:59 +0000)]
rearranged some todos and preparing to implement SimpleClient and ClientDocument IO stuff.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@195
be28352e-c001-0410-b1a7-
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jprocter [Tue, 21 Mar 2006 11:58:54 +0000 (11:58 +0000)]
refactored generally useful higher level document IO methods to base class.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@194
be28352e-c001-0410-b1a7-
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jprocter [Mon, 20 Mar 2006 22:57:05 +0000 (22:57 +0000)]
SimpleClientAppdata implemented but untested.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@193
be28352e-c001-0410-b1a7-
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jprocter [Mon, 20 Mar 2006 17:11:43 +0000 (17:11 +0000)]
half implemented the SimpleClientAppdata interface.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@192
be28352e-c001-0410-b1a7-
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jprocter [Mon, 20 Mar 2006 15:58:47 +0000 (15:58 +0000)]
added for completeness, but may not be necessary.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@191
be28352e-c001-0410-b1a7-
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pmarguerite [Mon, 20 Mar 2006 13:51:27 +0000 (13:51 +0000)]
Add object casting for instrospection methods
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@190
be28352e-c001-0410-b1a7-
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pmarguerite [Mon, 20 Mar 2006 13:43:07 +0000 (13:43 +0000)]
Remove local file Jim local file path for the current working directory.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@189
be28352e-c001-0410-b1a7-
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jprocter [Mon, 20 Mar 2006 13:03:34 +0000 (13:03 +0000)]
debugging the org.vamsas.client.SessionUrn selection mechanism (also partial bits for simpleclientDocument stuff)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@188
be28352e-c001-0410-b1a7-
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jprocter [Sun, 19 Mar 2006 18:01:33 +0000 (18:01 +0000)]
removed todo
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@187
be28352e-c001-0410-b1a7-
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jprocter [Fri, 17 Mar 2006 09:27:31 +0000 (09:27 +0000)]
renamed base class for all vamsas document objects (now org.vamsas.client.Vobject)
there may be some incorrectly modified javadocs in unrelated files.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@186
be28352e-c001-0410-b1a7-
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jprocter [Thu, 16 Mar 2006 18:02:21 +0000 (18:02 +0000)]
changed semaphore implementation and session modified flag.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@185
be28352e-c001-0410-b1a7-
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jprocter [Thu, 16 Mar 2006 18:00:51 +0000 (18:00 +0000)]
simplification of some events and clarification.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@184
be28352e-c001-0410-b1a7-
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jprocter [Thu, 16 Mar 2006 12:16:43 +0000 (12:16 +0000)]
added simple semaphore file mechanism for session directory.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@183
be28352e-c001-0410-b1a7-
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jprocter [Thu, 16 Mar 2006 11:18:02 +0000 (11:18 +0000)]
null sessionUrn parameter to create a new session
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@182
be28352e-c001-0410-b1a7-
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jprocter [Wed, 15 Mar 2006 19:35:11 +0000 (19:35 +0000)]
adding various state flags for events
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@181
be28352e-c001-0410-b1a7-
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jprocter [Tue, 14 Mar 2006 19:24:40 +0000 (19:24 +0000)]
partly finished analysis of vamsas client session events.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@180
be28352e-c001-0410-b1a7-
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jprocter [Tue, 14 Mar 2006 19:24:39 +0000 (19:24 +0000)]
partly finished analysis of vamsas client session events.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@179
be28352e-c001-0410-b1a7-
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jprocter [Tue, 14 Mar 2006 18:47:43 +0000 (18:47 +0000)]
trivial typo
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@178
be28352e-c001-0410-b1a7-
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jprocter [Tue, 14 Mar 2006 18:25:13 +0000 (18:25 +0000)]
extended clientfactory interface for session discovery and default session connection
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@177
be28352e-c001-0410-b1a7-
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jprocter [Tue, 14 Mar 2006 17:59:32 +0000 (17:59 +0000)]
reprioritising TODOs and LATERs and fixing documentation typos.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@176
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 19:34:48 +0000 (19:34 +0000)]
removed unnecessary createdummyVamsasDocument private method.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@175
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 19:31:49 +0000 (19:31 +0000)]
initial org.vamsas.client.IClientAppData implementation phase.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@174
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 19:31:24 +0000 (19:31 +0000)]
fixed a slight bug in AppData entry searching, and introduced generic AppData entry searching methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@173
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 19:23:12 +0000 (19:23 +0000)]
introduced org.vamsas.client.IClientAppData interface to get and set app-global and user-specific appdata chunks.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@172
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 16:40:47 +0000 (16:40 +0000)]
fixed probable bug
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@171
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 16:29:56 +0000 (16:29 +0000)]
updated example application to handle IClient.getDocument() exceptions and ensured IVorbaIdFactory actually has object reference for the object it is registering.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@170
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 15:16:26 +0000 (15:16 +0000)]
parameterised the default empty document construction
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@169
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 14:56:22 +0000 (14:56 +0000)]
SimpleClient creates dummy documents.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@168
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Jan 2006 14:49:18 +0000 (14:49 +0000)]
note about making default provenance entries at same time as ensuring all Vorba Ids are made.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@167
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jprocter [Mon, 23 Jan 2006 19:10:43 +0000 (19:10 +0000)]
implementing minimal set : SimpleClientFactory createSession method -> SimpleClient -> SimpleDocument + events.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@166
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jprocter [Mon, 23 Jan 2006 14:14:59 +0000 (14:14 +0000)]
beginning refactoring of locked IO for lists.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@165
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jprocter [Mon, 23 Jan 2006 14:14:45 +0000 (14:14 +0000)]
beginning refactoring of locked IO for lists.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@164
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jprocter [Mon, 23 Jan 2006 10:54:24 +0000 (10:54 +0000)]
clarified the getSessionUrn function and added new importDocument method
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@163
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jprocter [Mon, 23 Jan 2006 10:53:19 +0000 (10:53 +0000)]
added some more comments about event types/implementation
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@162
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jprocter [Mon, 23 Jan 2006 10:52:24 +0000 (10:52 +0000)]
added asFile method to get urn path as a file object.
Need to fix this to deal with local/non local urns.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@161
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jprocter [Mon, 23 Jan 2006 10:34:06 +0000 (10:34 +0000)]
urn classes for different kinds of vamsas object.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@160
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jprocter [Mon, 23 Jan 2006 10:13:23 +0000 (10:13 +0000)]
urn classes for different kinds of vamsas object.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@159
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jprocter [Fri, 20 Jan 2006 18:03:29 +0000 (18:03 +0000)]
partially implemented simpleclient.EventGenerator
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@158
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jprocter [Fri, 20 Jan 2006 18:01:37 +0000 (18:01 +0000)]
added Appender for the VAMSAS session.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@157
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jprocter [Fri, 20 Jan 2006 16:19:45 +0000 (16:19 +0000)]
comments and removed spurious todo:
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@156
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jprocter [Fri, 20 Jan 2006 15:22:15 +0000 (15:22 +0000)]
tidying IO.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@155
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jprocter [Fri, 20 Jan 2006 12:00:23 +0000 (12:00 +0000)]
added overwrite flag to VamsasArchive writer class (avoids loss of locks on file deletion)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@154
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jprocter [Fri, 20 Jan 2006 11:05:28 +0000 (11:05 +0000)]
VamsasArchive tested. Locked IO routines to be implemented in ArchiveFile
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@153
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jprocter [Fri, 20 Jan 2006 09:57:33 +0000 (09:57 +0000)]
removed after schema modification,
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@152
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jprocter [Fri, 20 Jan 2006 08:50:30 +0000 (08:50 +0000)]
more locked IO performance tests.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@151
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jprocter [Thu, 19 Jan 2006 18:17:31 +0000 (18:17 +0000)]
introduced locked IO testing for Archive IO
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@150
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jprocter [Thu, 19 Jan 2006 18:17:04 +0000 (18:17 +0000)]
started on ClientDocument implementation and Locked IO tests for VamsasArchive
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@149
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jprocter [Thu, 19 Jan 2006 18:15:51 +0000 (18:15 +0000)]
added skeleton class for vorbaId methods and comments
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@148
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jprocter [Thu, 19 Jan 2006 13:32:33 +0000 (13:32 +0000)]
todo
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@147
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jprocter [Thu, 19 Jan 2006 12:12:42 +0000 (12:12 +0000)]
moved IClientDocument implementation into the simpleclient package.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@146
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jprocter [Thu, 19 Jan 2006 12:12:04 +0000 (12:12 +0000)]
set correct get/Set VamsasRoots type, added addVamsasRoot, and some more TODOs
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@145
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