source.jalview.org Git - jabaws.git/log

jprocter [Wed, 2 Nov 2011 17:34:40 +0000 (17:34 +0000)]

test that methods and fields of Category are publicly accessible

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4707 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 2 Nov 2011 11:56:11 +0000 (11:56 +0000)]

A few minor changes to the test

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4706 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 2 Nov 2011 11:44:36 +0000 (11:44 +0000)]

update binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4705 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 2 Nov 2011 11:41:50 +0000 (11:41 +0000)]

Assign a test to an appropriate test category

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4704 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 2 Nov 2011 11:39:06 +0000 (11:39 +0000)]

Fix bug in category class and use Jim's test as a test case

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4703 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 31 Oct 2011 17:48:42 +0000 (17:48 +0000)]

update build artefacts

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4701 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 31 Oct 2011 17:47:35 +0000 (17:47 +0000)]

Move Category into data.msa package from ws.server to get it into min jabaws package.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4700 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 13 Oct 2011 14:47:09 +0000 (14:47 +0000)]

JABAWS web site update - new logo and title page

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4655 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 11 Oct 2011 11:44:28 +0000 (11:44 +0000)]

change tracker code to compbio

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4652 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 11 Oct 2011 11:37:05 +0000 (11:37 +0000)]

Google Analytics statistics is added

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4651 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 11 Oct 2011 11:15:22 +0000 (11:15 +0000)]

ga config file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4650 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 10 Oct 2011 17:13:34 +0000 (17:13 +0000)]

Changing of input type

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4648 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 5 Oct 2011 10:52:23 +0000 (10:52 +0000)]

Web site updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4643 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 5 Oct 2011 10:51:38 +0000 (10:51 +0000)]

Remove test jobs from statistics

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4642 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 16 Sep 2011 15:17:24 +0000 (15:17 +0000)]

Service status pages update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4592 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 16 Sep 2011 14:39:42 +0000 (14:39 +0000)]

web site update new pages for awss beanstalk deployment

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4591 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 16 Sep 2011 14:38:53 +0000 (14:38 +0000)]

allow head method for all jabaws servlets

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4590 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 16 Sep 2011 14:38:31 +0000 (14:38 +0000)]

add response to head method

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4589 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 6 Sep 2011 17:15:55 +0000 (17:15 +0000)]

comment out services checkers from the security constrain

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4574 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 6 Sep 2011 17:15:22 +0000 (17:15 +0000)]

doc update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4573 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 6 Sep 2011 16:12:47 +0000 (16:12 +0000)]

Web services status checking servlets, new clustalo x32 binary from Fabian, other small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4571 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 6 Sep 2011 12:05:44 +0000 (12:05 +0000)]

Head title change

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4568 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 5 Sep 2011 15:20:11 +0000 (15:20 +0000)]

Update for web services stubs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4566 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 5 Sep 2011 15:12:40 +0000 (15:12 +0000)]

Binaries for Mac in a war file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4565 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 5 Sep 2011 15:11:55 +0000 (15:11 +0000)]

updates to web site

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4564 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 5 Sep 2011 15:11:23 +0000 (15:11 +0000)]

Adding listener for setting executable flag on the web application start up

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4563 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 5 Sep 2011 15:09:58 +0000 (15:09 +0000)]

Add an implementation for Services.getServiceInfo method and categorization for services.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4562 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 2 Sep 2011 17:22:37 +0000 (17:22 +0000)]

web pages updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4559 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 25 Aug 2011 15:46:49 +0000 (15:46 +0000)]

An attempt to automatically make binaries executables - not successful but the code is commented out and let in for future use

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4548 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 16 Aug 2011 13:22:10 +0000 (13:22 +0000)]

Minor changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4526 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 16 Aug 2011 11:38:54 +0000 (11:38 +0000)]

minor change

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4525 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 16 Aug 2011 11:38:38 +0000 (11:38 +0000)]

adding one more window web service into the test case

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4524 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 13:37:46 +0000 (13:37 +0000)]

rearrangement for mac binaries to link up with a web page

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4509 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 13:35:18 +0000 (13:35 +0000)]

Javadoc fixes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4508 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 13:34:38 +0000 (13:34 +0000)]

adding clustalO documentation

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4507 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 13:34:07 +0000 (13:34 +0000)]

updated javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4506 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 13:29:30 +0000 (13:29 +0000)]

remove dm javadoc to update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4505 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 13:02:22 +0000 (13:02 +0000)]

delete old javadoc to update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4504 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 12:39:57 +0000 (12:39 +0000)]

build client source when build all

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4503 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 12:38:29 +0000 (12:38 +0000)]

Mac binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4502 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 12:36:42 +0000 (12:36 +0000)]

website docs update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4501 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 12 Aug 2011 12:32:00 +0000 (12:32 +0000)]

Services class refactored to get rid of engines and runners dependencies.
Build script has new task to pack client sources

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4500 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 15:00:41 +0000 (15:00 +0000)]

Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4495 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 15:00:30 +0000 (15:00 +0000)]

Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4494 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 15:00:12 +0000 (15:00 +0000)]

Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4493 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 12:56:46 +0000 (12:56 +0000)]

Adding new web service, getting rid of virtual box in docs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4491 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 12:00:20 +0000 (12:00 +0000)]

clustalo x64 from the developer

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4490 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 11:57:24 +0000 (11:57 +0000)]

x86 and x64 clustalo binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4489 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 11:56:53 +0000 (11:56 +0000)]

x86 clustalo binary

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4488 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 11 Aug 2011 10:45:09 +0000 (10:45 +0000)]

Fixes to testcase, take into account the new WS

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4487 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 10 Aug 2011 16:07:37 +0000 (16:07 +0000)]

Drop support for VirtualBox

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4484 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 14:44:32 +0000 (14:44 +0000)]

dundee executable conf

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4476 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 14:38:34 +0000 (14:38 +0000)]

Get rid of v_hmem settings

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4475 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 14:38:26 +0000 (14:38 +0000)]

Get rid of v_hmem settings

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4474 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 14:32:46 +0000 (14:32 +0000)]

Comments

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4473 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:22:09 +0000 (13:22 +0000)]

update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4470 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:21:54 +0000 (13:21 +0000)]

ClustalO servlets

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4469 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:21:26 +0000 (13:21 +0000)]

reverting cluster engine settings (disabled by default)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4468 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:19:45 +0000 (13:19 +0000)]

ClustalO settings

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4467 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:19:25 +0000 (13:19 +0000)]

ClustalO compile

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4466 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:18:35 +0000 (13:18 +0000)]

clustalo 64x binary

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4465 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:17:10 +0000 (13:17 +0000)]

Clustal Omega web service wrapper and tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4464 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:16:38 +0000 (13:16 +0000)]

Clustal Omega web service wrapper and tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4463 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 4 Aug 2011 13:16:16 +0000 (13:16 +0000)]

Clustal Omega web service wrapper and tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4462 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 3 Aug 2011 17:06:32 +0000 (17:06 +0000)]

Wrapper for Clustal Omega.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4458 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 2 Aug 2011 16:50:27 +0000 (16:50 +0000)]

Updates to a web site

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4441 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 2 Aug 2011 16:49:23 +0000 (16:49 +0000)]

fix for a broken link to a static page

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4440 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 13 Jul 2011 11:31:19 +0000 (11:31 +0000)]

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4412 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 13 Jul 2011 11:31:08 +0000 (11:31 +0000)]

new web site design and updates to the web pages

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4411 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 13 Jul 2011 11:30:06 +0000 (11:30 +0000)]

new images for jabaws 2 web site, getting rid of old images

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4410 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 6 Jul 2011 12:18:53 +0000 (12:18 +0000)]

formatting change

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4396 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 6 Jul 2011 12:15:05 +0000 (12:15 +0000)]

ia32 iupred

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4395 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 6 Jul 2011 12:14:49 +0000 (12:14 +0000)]

ia32 iupred

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4394 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 6 Jul 2011 12:13:54 +0000 (12:13 +0000)]

Pre release Executable.properties, help added, unused properties commented out

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4393 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Wed, 6 Jul 2011 10:56:04 +0000 (10:56 +0000)]

Better method for searching JAVA

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4392 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 1 Jul 2011 10:59:53 +0000 (10:59 +0000)]

Add servlet for public usage stats display.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4384 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 1 Jul 2011 09:42:12 +0000 (09:42 +0000)]

Limits are optional so correct tests

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4379 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 1 Jul 2011 09:41:27 +0000 (09:41 +0000)]

remove assert

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4378 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 30 Jun 2011 17:22:57 +0000 (17:22 +0000)]

obtain JAVA executable path from the JAVA_HOME variable. Does not require path to java for jar libraries.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4376 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 28 Jun 2011 16:54:59 +0000 (16:54 +0000)]

Stat collector updates to work with JABA 2 input & output files

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4366 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Tue, 28 Jun 2011 15:30:02 +0000 (15:30 +0000)]

Clean database & small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4363 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 17:11:09 +0000 (17:11 +0000)]

Expose a few methods of Client and WSTester as API for Jim, new distributables.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4343 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 16:40:37 +0000 (16:40 +0000)]

Slight refactoring

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4342 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 15:33:31 +0000 (15:33 +0000)]

Minor tweaks

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4340 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 14:55:27 +0000 (14:55 +0000)]

Dundee compiled x86 binaries a few fixes for compile script

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4338 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 13:48:11 +0000 (13:48 +0000)]

Build script improvements & updated util

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4337 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 13:42:45 +0000 (13:42 +0000)]

Generalizing configuration prior to release.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4336 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Mon, 27 Jun 2011 13:29:22 +0000 (13:29 +0000)]

remove settings as separate settings no longer required
Add separate conf setting for engines and executables for dundee

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4334 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 24 Jun 2011 23:32:23 +0000 (23:32 +0000)]

Get rid of unused code

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4329 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Fri, 24 Jun 2011 17:17:29 +0000 (17:17 +0000)]

Further simplification of build tasks
get rid of biojava jar as it's not in use

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4328 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:15:51 +0000 (14:15 +0000)]

update to compbio.utils and a few small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4327 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:11:27 +0000 (14:11 +0000)]

build script updated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4326 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:10:48 +0000 (14:10 +0000)]

links update (not checked though)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4325 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:10:02 +0000 (14:10 +0000)]

compbio projects sources

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4324 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:08:55 +0000 (14:08 +0000)]

pack binaries from folders into archives for easy download

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4323 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:04:51 +0000 (14:04 +0000)]

relocated to website/archive folder

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4322 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:04:22 +0000 (14:04 +0000)]

relocate pre-compiled executables from binaries folder

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4321 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 14:02:01 +0000 (14:02 +0000)]

remove old executables

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4320 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 12:09:51 +0000 (12:09 +0000)]

rename

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4317 e3abac25-378b-4346-85de-24260fe3988d

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pvtroshin [Thu, 23 Jun 2011 10:56:00 +0000 (10:56 +0000)]

regenerated stubs & TODO

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4314 e3abac25-378b-4346-85de-24260fe3988d