amwaterhouse [Wed, 5 Apr 2006 11:39:42 +0000 (11:39 +0000)]
Padgap history
amwaterhouse [Wed, 5 Apr 2006 11:38:40 +0000 (11:38 +0000)]
Note on build target being usage
amwaterhouse [Wed, 5 Apr 2006 11:37:35 +0000 (11:37 +0000)]
Default raget is :usage
amwaterhouse [Wed, 5 Apr 2006 11:01:49 +0000 (11:01 +0000)]
2.08 update
amwaterhouse [Tue, 4 Apr 2006 17:18:54 +0000 (17:18 +0000)]
2.08 updates
amwaterhouse [Tue, 4 Apr 2006 17:07:14 +0000 (17:07 +0000)]
Modified for 2.08
amwaterhouse [Tue, 4 Apr 2006 17:06:01 +0000 (17:06 +0000)]
New files
amwaterhouse [Tue, 4 Apr 2006 13:09:28 +0000 (13:09 +0000)]
Draw threshold over graph
amwaterhouse [Tue, 4 Apr 2006 12:53:36 +0000 (12:53 +0000)]
loadDataFile is public
amwaterhouse [Tue, 4 Apr 2006 12:53:14 +0000 (12:53 +0000)]
Add annoations from the command line
amwaterhouse [Tue, 4 Apr 2006 10:58:29 +0000 (10:58 +0000)]
Overview follows cursor movement
amwaterhouse [Tue, 4 Apr 2006 10:50:04 +0000 (10:50 +0000)]
Set keyboard numbers to null if esc pressed
amwaterhouse [Tue, 4 Apr 2006 10:47:57 +0000 (10:47 +0000)]
Keyboard editing added to applet
amwaterhouse [Tue, 4 Apr 2006 09:38:11 +0000 (09:38 +0000)]
set current tree once the tree is prepared
amwaterhouse [Tue, 4 Apr 2006 09:37:38 +0000 (09:37 +0000)]
Jalview2XML does not use static load
amwaterhouse [Tue, 4 Apr 2006 09:37:12 +0000 (09:37 +0000)]
Pad gaps removes excess gaps
amwaterhouse [Tue, 4 Apr 2006 09:36:15 +0000 (09:36 +0000)]
Specify com.stevesoft.pat.Regex
amwaterhouse [Tue, 4 Apr 2006 09:35:34 +0000 (09:35 +0000)]
Autocalculate consensus
amwaterhouse [Tue, 4 Apr 2006 09:33:58 +0000 (09:33 +0000)]
More keys for editing
amwaterhouse [Tue, 4 Apr 2006 09:33:40 +0000 (09:33 +0000)]
Get hiddenBoundaryLeft and right
amwaterhouse [Tue, 4 Apr 2006 09:33:12 +0000 (09:33 +0000)]
Jalview2XML does not use static load anymore
amwaterhouse [Tue, 4 Apr 2006 09:32:51 +0000 (09:32 +0000)]
Disable hide regions
amwaterhouse [Tue, 4 Apr 2006 09:32:28 +0000 (09:32 +0000)]
Scrolls if dragged off the screen
amwaterhouse [Tue, 4 Apr 2006 09:31:52 +0000 (09:31 +0000)]
Keyboard editing
amwaterhouse [Tue, 4 Apr 2006 09:31:35 +0000 (09:31 +0000)]
Cursor colour
amwaterhouse [Tue, 4 Apr 2006 09:31:17 +0000 (09:31 +0000)]
Set current tree when ready
amwaterhouse [Tue, 4 Apr 2006 09:31:05 +0000 (09:31 +0000)]
Allows loading of archive XML
amwaterhouse [Tue, 4 Apr 2006 09:30:50 +0000 (09:30 +0000)]
For archive only
amwaterhouse [Tue, 4 Apr 2006 09:30:27 +0000 (09:30 +0000)]
Uses descriptors
amwaterhouse [Tue, 4 Apr 2006 09:29:54 +0000 (09:29 +0000)]
Binding with descriptors
amwaterhouse [Tue, 4 Apr 2006 09:28:59 +0000 (09:28 +0000)]
Namespace changes
amwaterhouse [Fri, 24 Mar 2006 16:29:00 +0000 (16:29 +0000)]
Feature settings
amwaterhouse [Fri, 24 Mar 2006 16:28:29 +0000 (16:28 +0000)]
Has its own featureRenderer
amwaterhouse [Fri, 24 Mar 2006 15:36:53 +0000 (15:36 +0000)]
Group colours not used
amwaterhouse [Fri, 24 Mar 2006 15:36:33 +0000 (15:36 +0000)]
Associated Data menu item
amwaterhouse [Fri, 24 Mar 2006 15:36:04 +0000 (15:36 +0000)]
Cursor added
amwaterhouse [Fri, 24 Mar 2006 15:35:44 +0000 (15:35 +0000)]
Typo
amwaterhouse [Fri, 24 Mar 2006 15:35:31 +0000 (15:35 +0000)]
fr.transferSettings
amwaterhouse [Fri, 24 Mar 2006 15:35:10 +0000 (15:35 +0000)]
FeatureSettings bug fixed
amwaterhouse [Fri, 24 Mar 2006 15:34:48 +0000 (15:34 +0000)]
Feature added to group search results
amwaterhouse [Fri, 24 Mar 2006 15:34:21 +0000 (15:34 +0000)]
Groups compatibility
amwaterhouse [Fri, 24 Mar 2006 15:33:44 +0000 (15:33 +0000)]
No need to hava SSX as array
amwaterhouse [Fri, 24 Mar 2006 15:33:20 +0000 (15:33 +0000)]
CursoMode added
amwaterhouse [Fri, 24 Mar 2006 15:32:50 +0000 (15:32 +0000)]
Load data file added
amwaterhouse [Fri, 24 Mar 2006 15:32:22 +0000 (15:32 +0000)]
Trim line
amwaterhouse [Fri, 24 Mar 2006 15:32:08 +0000 (15:32 +0000)]
Features added to group Uniprot
amwaterhouse [Fri, 24 Mar 2006 15:31:42 +0000 (15:31 +0000)]
Add check if sequence already exists
amwaterhouse [Fri, 24 Mar 2006 15:31:11 +0000 (15:31 +0000)]
FeaturesGroup added to constructor
amwaterhouse [Fri, 24 Mar 2006 15:29:33 +0000 (15:29 +0000)]
1 too many
amwaterhouse [Fri, 24 Mar 2006 15:28:54 +0000 (15:28 +0000)]
Features added to group search results
amwaterhouse [Fri, 24 Mar 2006 15:28:30 +0000 (15:28 +0000)]
-1 +1 check removed
amwaterhouse [Fri, 24 Mar 2006 15:27:59 +0000 (15:27 +0000)]
1 too many in drawgraph
amwaterhouse [Fri, 24 Mar 2006 15:27:21 +0000 (15:27 +0000)]
Annotation colour scheme added
amwaterhouse [Fri, 24 Mar 2006 15:26:37 +0000 (15:26 +0000)]
Called from AnnotationColourChooser and Feature Settings
amwaterhouse [Fri, 24 Mar 2006 15:25:59 +0000 (15:25 +0000)]
Annotation colours added to applet
amwaterhouse [Fri, 24 Mar 2006 15:25:09 +0000 (15:25 +0000)]
ZSort no longer static
amwaterhouse [Fri, 24 Mar 2006 15:24:53 +0000 (15:24 +0000)]
Has own featurerenderer
amwaterhouse [Mon, 20 Mar 2006 14:48:50 +0000 (14:48 +0000)]
Rearranged text
amwaterhouse [Mon, 20 Mar 2006 14:42:37 +0000 (14:42 +0000)]
Correct reference
amwaterhouse [Mon, 20 Mar 2006 14:34:20 +0000 (14:34 +0000)]
typo
amwaterhouse [Mon, 20 Mar 2006 14:34:06 +0000 (14:34 +0000)]
Reference added
jprocter [Mon, 20 Mar 2006 10:02:06 +0000 (10:02 +0000)]
added example jnlp to memory settings help
jprocter [Mon, 20 Mar 2006 09:56:54 +0000 (09:56 +0000)]
added link to example jnlp file
jprocter [Mon, 20 Mar 2006 09:56:41 +0000 (09:56 +0000)]
example jnlp file for users to edit and save locally
jprocter [Fri, 17 Mar 2006 08:51:44 +0000 (08:51 +0000)]
jnet method description correction.
amwaterhouse [Thu, 16 Mar 2006 17:25:35 +0000 (17:25 +0000)]
Fix for Finn Drablos bug. Must use equals for comparing strings
amwaterhouse [Thu, 16 Mar 2006 15:31:36 +0000 (15:31 +0000)]
historyItem.restore
amwaterhouse [Thu, 16 Mar 2006 15:31:02 +0000 (15:31 +0000)]
HideSequences
amwaterhouse [Thu, 16 Mar 2006 15:30:41 +0000 (15:30 +0000)]
getWidth and getHeight just once
amwaterhouse [Thu, 16 Mar 2006 15:30:13 +0000 (15:30 +0000)]
-1 to drawGraphs
amwaterhouse [Thu, 16 Mar 2006 15:29:55 +0000 (15:29 +0000)]
isVisible and hiddenboundary added
amwaterhouse [Thu, 16 Mar 2006 15:29:34 +0000 (15:29 +0000)]
UserColors not used here
amwaterhouse [Thu, 16 Mar 2006 15:29:10 +0000 (15:29 +0000)]
Hidden Rows
amwaterhouse [Thu, 16 Mar 2006 15:28:57 +0000 (15:28 +0000)]
Reveal
amwaterhouse [Thu, 16 Mar 2006 15:28:41 +0000 (15:28 +0000)]
Faster
amwaterhouse [Thu, 16 Mar 2006 15:28:30 +0000 (15:28 +0000)]
Hide Sequences
amwaterhouse [Thu, 16 Mar 2006 15:28:13 +0000 (15:28 +0000)]
Tooltip for hidden columns
amwaterhouse [Thu, 16 Mar 2006 15:27:47 +0000 (15:27 +0000)]
Hidden column adjustments
amwaterhouse [Thu, 16 Mar 2006 15:27:23 +0000 (15:27 +0000)]
Scrolls when editing
amwaterhouse [Thu, 16 Mar 2006 15:21:58 +0000 (15:21 +0000)]
Gethidden sequences
amwaterhouse [Thu, 16 Mar 2006 15:21:24 +0000 (15:21 +0000)]
HiddenSequence methods
amwaterhouse [Thu, 16 Mar 2006 15:20:57 +0000 (15:20 +0000)]
getHiddenSequences
amwaterhouse [Thu, 16 Mar 2006 15:20:31 +0000 (15:20 +0000)]
Keeps a record of hidden sequences
amwaterhouse [Thu, 16 Mar 2006 15:19:24 +0000 (15:19 +0000)]
Allow loading from Zip files
amwaterhouse [Thu, 16 Mar 2006 15:18:55 +0000 (15:18 +0000)]
Load tree
amwaterhouse [Thu, 16 Mar 2006 15:18:17 +0000 (15:18 +0000)]
CandP takes AlignFrame, not applet
amwaterhouse [Thu, 16 Mar 2006 15:18:02 +0000 (15:18 +0000)]
Fastpaint updates
amwaterhouse [Thu, 16 Mar 2006 15:17:14 +0000 (15:17 +0000)]
Check endres when drawing graphs
amwaterhouse [Thu, 16 Mar 2006 15:16:45 +0000 (15:16 +0000)]
Cut and paste may be inserted into Dialog frame
amwaterhouse [Thu, 16 Mar 2006 15:16:21 +0000 (15:16 +0000)]
Fastest implementation so far
amwaterhouse [Thu, 16 Mar 2006 15:16:03 +0000 (15:16 +0000)]
Extra argument false
amwaterhouse [Thu, 16 Mar 2006 15:15:18 +0000 (15:15 +0000)]
Scroll implemented for applet editing
amwaterhouse [Thu, 16 Mar 2006 15:15:05 +0000 (15:15 +0000)]
Selection Group rendering updated
amwaterhouse [Thu, 16 Mar 2006 15:14:28 +0000 (15:14 +0000)]
Reduced arguments for speed
amwaterhouse [Thu, 16 Mar 2006 15:14:09 +0000 (15:14 +0000)]
Can be used for user features
amwaterhouse [Thu, 16 Mar 2006 15:13:55 +0000 (15:13 +0000)]
Add new feature from seqrch results
amwaterhouse [Thu, 16 Mar 2006 15:13:43 +0000 (15:13 +0000)]
Feature rendering in groups
amwaterhouse [Thu, 16 Mar 2006 15:12:26 +0000 (15:12 +0000)]
Out of bounds check
jprocter [Thu, 16 Mar 2006 10:24:50 +0000 (10:24 +0000)]
added description of alignment quality scores and separated
description of conservation calculation from the instructions for
colouring alignments by it.
jprocter [Tue, 14 Mar 2006 11:22:04 +0000 (11:22 +0000)]
methods for searching DBRef lists
git://source.jalview.org / jalview.git / log