jalview-manual.git
11 years agoManual version 1.4.1 updated 18th January for Version 2.8 and EMBL-EBI course
Jim Procter [Fri, 1 Feb 2013 17:11:46 +0000 (17:11 +0000)]
Manual version 1.4.1 updated 18th January for Version 2.8 and EMBL-EBI course

11 years agov2.8 new website and logo
Jim Procter [Fri, 1 Feb 2013 17:10:21 +0000 (17:10 +0000)]
v2.8 new website and logo

11 years agov 2.8 logo and new top level help page
Jim Procter [Fri, 1 Feb 2013 17:10:10 +0000 (17:10 +0000)]
v 2.8 logo and new top level help page

11 years agov 2.8 logo and authors
Jim Procter [Fri, 1 Feb 2013 17:09:55 +0000 (17:09 +0000)]
v 2.8 logo and authors

11 years agov 2.8 capabilitis
Jim Procter [Fri, 1 Feb 2013 17:09:38 +0000 (17:09 +0000)]
v 2.8 capabilitis

11 years agov2.8 new database selector for sequence fetcher
Jim Procter [Fri, 1 Feb 2013 17:09:23 +0000 (17:09 +0000)]
v2.8 new database selector for sequence fetcher

11 years ago2.8 per sequence annotation colouring
Jim Procter [Fri, 1 Feb 2013 17:09:04 +0000 (17:09 +0000)]
2.8 per sequence annotation colouring

11 years ago2.8 colourschemes
Jim Procter [Fri, 1 Feb 2013 17:08:51 +0000 (17:08 +0000)]
2.8 colourschemes

11 years agorevised pca in v2.8
Jim Procter [Fri, 1 Feb 2013 17:08:20 +0000 (17:08 +0000)]
revised pca in v2.8

11 years agoalignment services in v2.8
Jim Procter [Fri, 1 Feb 2013 17:07:52 +0000 (17:07 +0000)]
alignment services in v2.8

11 years agov2.8 jabaws config with server status
Jim Procter [Fri, 1 Feb 2013 17:07:30 +0000 (17:07 +0000)]
v2.8 jabaws config with server status

11 years agov2.8 ws menu
Jim Procter [Fri, 1 Feb 2013 17:07:02 +0000 (17:07 +0000)]
v2.8 ws menu

11 years agov2.8 sequence disorder
Jim Procter [Fri, 1 Feb 2013 17:06:44 +0000 (17:06 +0000)]
v2.8 sequence disorder

11 years agov2.8 sequence details window
Jim Procter [Fri, 1 Feb 2013 17:06:11 +0000 (17:06 +0000)]
v2.8 sequence details window

11 years agoignore intermediate files
Jim Procter [Fri, 1 Feb 2013 17:03:43 +0000 (17:03 +0000)]
ignore intermediate files

11 years agoupdated tutorial for Jalview 2.7 - includes contributions from Saif Shehata
Jim Procter [Thu, 10 Jan 2013 18:01:17 +0000 (18:01 +0000)]
updated tutorial for Jalview 2.7 - includes contributions from Saif Shehata
(changes were made in June 2012)

13 years agoupdate to 1.3.01
Jim Procter [Mon, 5 Dec 2011 10:35:09 +0000 (10:35 +0000)]
update to 1.3.01

13 years agofix left-right page numbering and incorrect menu item
Jim Procter [Mon, 5 Dec 2011 10:28:44 +0000 (10:28 +0000)]
fix left-right page numbering and incorrect menu item

13 years agoupdated screen optimized version
Jim Procter [Tue, 29 Nov 2011 07:29:41 +0000 (07:29 +0000)]
updated screen optimized version

13 years agoupdated master document with dna alignment tools table
Jim Procter [Tue, 29 Nov 2011 07:19:05 +0000 (07:19 +0000)]
updated master document with dna alignment tools table

13 years agocompleted table of jabaws alignment services useful for DNA
Jim Procter [Tue, 29 Nov 2011 07:17:01 +0000 (07:17 +0000)]
completed table of jabaws alignment services useful for DNA

13 years agojalview manual v1.3 - updated for v2.7 of Jalview with new material for structure...
Jim Procter [Mon, 28 Nov 2011 16:14:25 +0000 (16:14 +0000)]
jalview manual v1.3 - updated for v2.7 of Jalview with new material for structure superposition and JABA server config.

13 years agodrag and drop association of PDB structures
Jim Procter [Mon, 28 Nov 2011 16:10:52 +0000 (16:10 +0000)]
drag and drop association of PDB structures

13 years agocolour by .. submenu figure
Jim Procter [Mon, 28 Nov 2011 16:10:41 +0000 (16:10 +0000)]
colour by .. submenu figure

13 years agodnmt1_mouse complex domain alignment colouring example
Jim Procter [Mon, 28 Nov 2011 16:10:12 +0000 (16:10 +0000)]
dnmt1_mouse complex domain alignment colouring example

13 years agojv2.7 rss newsreader
Jim Procter [Mon, 28 Nov 2011 16:09:21 +0000 (16:09 +0000)]
jv2.7 rss newsreader

13 years agojabaws config panel in jalview preferences
Jim Procter [Mon, 28 Nov 2011 16:09:11 +0000 (16:09 +0000)]
jabaws config panel in jalview preferences

13 years agojv2.7 capabilities diagram
Jim Procter [Mon, 28 Nov 2011 16:08:59 +0000 (16:08 +0000)]
jv2.7 capabilities diagram

13 years agoalignment web service parameters from html help
Jim Procter [Mon, 28 Nov 2011 16:08:48 +0000 (16:08 +0000)]
alignment web service parameters from html help

13 years agoferredoxin structure superposition
Jim Procter [Mon, 28 Nov 2011 16:08:34 +0000 (16:08 +0000)]
ferredoxin structure superposition

13 years agoslider from clustal parameters
Jim Procter [Mon, 28 Nov 2011 16:08:15 +0000 (16:08 +0000)]
slider from clustal parameters

13 years agov2.7 splash screen
Jim Procter [Mon, 28 Nov 2011 16:07:55 +0000 (16:07 +0000)]
v2.7 splash screen

13 years agov2.7 startup screen
Jim Procter [Mon, 28 Nov 2011 16:07:45 +0000 (16:07 +0000)]
v2.7 startup screen

13 years agojaba style alignment submission
Jim Procter [Mon, 28 Nov 2011 16:07:34 +0000 (16:07 +0000)]
jaba style alignment submission

13 years agoreordered web services menu
Jim Procter [Mon, 28 Nov 2011 16:07:22 +0000 (16:07 +0000)]
reordered web services menu

13 years agofiles for superposition exercises
Jim Procter [Mon, 28 Nov 2011 16:06:57 +0000 (16:06 +0000)]
files for superposition exercises

13 years agorude typo fixed
Jim Procter [Fri, 6 May 2011 14:42:05 +0000 (14:42 +0000)]
rude typo fixed

13 years agopatches from Dundee Tutorial on Feb 2011
Jim Procter [Fri, 4 Mar 2011 14:30:16 +0000 (14:30 +0000)]
patches from Dundee Tutorial on Feb 2011

13 years agopatches from Dundee Tutorial on Feb 2011
Jim Procter [Fri, 4 Mar 2011 14:20:15 +0000 (14:20 +0000)]
patches from Dundee Tutorial on Feb 2011

14 years agopatched layout and fixed some typos noticed by tutee at 4th October 2010 session...
Jim Procter [Mon, 11 Oct 2010 15:27:19 +0000 (15:27 +0000)]
patched layout and fixed some typos noticed by tutee at 4th October 2010 session in oxford

14 years agopatched layout and fixed some typos noticed by tutee at 4th October 2010 session...
Jim Procter [Mon, 11 Oct 2010 15:13:23 +0000 (15:13 +0000)]
patched layout and fixed some typos noticed by tutee at 4th October 2010 session in oxford

14 years agospellchecking
Jim Procter [Mon, 14 Jun 2010 09:10:58 +0000 (09:10 +0000)]
spellchecking

14 years agojalview 2.5 updates
Jim Procter [Tue, 8 Jun 2010 16:50:02 +0000 (16:50 +0000)]
jalview 2.5 updates

15 years agoscreen optimized PDF
Jim Procter [Fri, 9 Jan 2009 14:10:11 +0000 (14:10 +0000)]
screen optimized PDF

15 years agoSettings for screen optimized PDF
Jim Procter [Fri, 9 Jan 2009 14:09:55 +0000 (14:09 +0000)]
Settings for screen optimized PDF

15 years agoremoved enfin fp workshop from front page
Jim Procter [Fri, 9 Jan 2009 13:56:38 +0000 (13:56 +0000)]
removed enfin fp workshop from front page

16 years agofinal version (draft) for EBI/Enfin Function Prediction Course
Jim Procter [Sat, 30 Aug 2008 16:53:09 +0000 (16:53 +0000)]
final version (draft) for EBI/Enfin Function Prediction Course

16 years agomore ignores
Jim Procter [Sat, 30 Aug 2008 16:52:22 +0000 (16:52 +0000)]
more ignores

16 years agoresized
Jim Procter [Sat, 30 Aug 2008 16:52:06 +0000 (16:52 +0000)]
resized

16 years agoupdated example PFAM accession
Jim Procter [Sat, 30 Aug 2008 16:51:53 +0000 (16:51 +0000)]
updated example PFAM accession

16 years agofirst ebi tutorial draft for 2.4 release
Jim Procter [Thu, 28 Aug 2008 09:10:11 +0000 (09:10 +0000)]
first ebi tutorial draft for 2.4 release

16 years agooriginal tutorial put online for version 2.2
Jim Procter [Thu, 14 Aug 2008 15:33:42 +0000 (15:33 +0000)]
original tutorial put online for version 2.2