pmarguerite [Fri, 18 May 2007 15:14:51 +0000 (15:14 +0000)]
VamsasSession: fixed incorrectly stopping the EventGeneratorThread
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@396
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 18 May 2007 14:48:31 +0000 (14:48 +0000)]
VamsasSession: insure the RemoveClientWatchCallBack handleWatchEvent method. no needed to check if there is no client in the client list,if the list does not have been modified
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@395
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pmarguerite [Fri, 18 May 2007 14:34:04 +0000 (14:34 +0000)]
Added support for crashed client.
Crashed client are removed correctly from the session client.
When a new client joins a session, it adds itself to the session client list and ensures that it is still in the list while it is active.
When a client wants to remove itself from the session, the client clears the session client list to check if it is the last client. (all actives clients should readd themself to the list during two watcher cycles, if the list is still empty. The client consideres itself as the last client of the session and closes properly the session)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@394
be28352e-c001-0410-b1a7-
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jprocter [Fri, 18 May 2007 11:41:01 +0000 (11:41 +0000)]
better command line processing options (load, save) and slower update poll check.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@393
be28352e-c001-0410-b1a7-
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jprocter [Fri, 18 May 2007 11:20:43 +0000 (11:20 +0000)]
javadoc todo
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@392
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jprocter [Fri, 18 May 2007 11:19:24 +0000 (11:19 +0000)]
removed old Mapping object dependency
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@391
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pmarguerite [Fri, 18 May 2007 09:56:42 +0000 (09:56 +0000)]
build.xml: modified javadoc ant task to add ref to the lib directory
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@390
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amwaterhouse [Fri, 18 May 2007 09:26:55 +0000 (09:26 +0000)]
sequenceMapping added
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@389
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:38:17 +0000 (16:38 +0000)]
castor-1.1 source generation
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@388
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:37:54 +0000 (16:37 +0000)]
Descriptors live in uk.ac.vamsas.objects.core.descriptors in castor-1.1 xml binding.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@387
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:33:25 +0000 (16:33 +0000)]
relatively silent debug state (have to sort out of this log4j or the one in resources is being used)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@386
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:32:03 +0000 (16:32 +0000)]
pick manager and simulation of alignment modification within existing document.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@385
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:15:30 +0000 (16:15 +0000)]
part-implemented and *untested*
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@384
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jprocter [Tue, 24 Apr 2007 16:13:49 +0000 (16:13 +0000)]
introduced hashCode based object change detection that works (see vamsas.test.exampleApplication)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@383
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:12:47 +0000 (16:12 +0000)]
attempt to fix occasional backupSessionFile exception.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@382
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:08:59 +0000 (16:08 +0000)]
ambiguous import of 'Lock' removed.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@381
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:07:59 +0000 (16:07 +0000)]
incorrect update approach (attempt prior to hashCode fix in castor-1.1(v))
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@380
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:05:51 +0000 (16:05 +0000)]
int to long type change in castor-1.1(v) objects
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@379
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:04:22 +0000 (16:04 +0000)]
rebult for castor-1.1(vamsas version)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@378
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:02:26 +0000 (16:02 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@377
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 15:58:37 +0000 (15:58 +0000)]
fixed session log configuration
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@376
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 15:55:36 +0000 (15:55 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@375
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 15:55:11 +0000 (15:55 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@374
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 15:54:37 +0000 (15:54 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@373
be28352e-c001-0410-b1a7-
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jprocter [Tue, 20 Mar 2007 14:27:01 +0000 (14:27 +0000)]
update detection mechanism based comparing the difference between the position of start and end tags of a Vobject between successive document unmarshallings.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@372
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 20 Mar 2007 14:27:00 +0000 (14:27 +0000)]
update detection mechanism based comparing the difference between the position of start and end tags of a Vobject between successive document unmarshallings.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@371
be28352e-c001-0410-b1a7-
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jprocter [Tue, 20 Mar 2007 14:19:41 +0000 (14:19 +0000)]
pass maintained hash of Vobject hash values to IdFactory so it can detect modified objects.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@370
be28352e-c001-0410-b1a7-
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jprocter [Tue, 20 Mar 2007 14:17:55 +0000 (14:17 +0000)]
commented out methods that might be used for accessing a list of updated objects stored in the vamsas session
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@369
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jprocter [Tue, 20 Mar 2007 14:16:49 +0000 (14:16 +0000)]
javadoc
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@368
be28352e-c001-0410-b1a7-
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jprocter [Tue, 20 Mar 2007 14:16:33 +0000 (14:16 +0000)]
new constructor to pass hash of Vobject hash values to unmarshalling mechanism for comparison with document objects.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@367
be28352e-c001-0410-b1a7-
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jprocter [Mon, 19 Mar 2007 13:26:04 +0000 (13:26 +0000)]
trap exceptions during session events and ensure pick messages are blocked whilst document changed events occur
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@366
be28352e-c001-0410-b1a7-
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jprocter [Mon, 19 Mar 2007 13:24:26 +0000 (13:24 +0000)]
debug log output
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@365
be28352e-c001-0410-b1a7-
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jprocter [Thu, 15 Mar 2007 15:25:25 +0000 (15:25 +0000)]
switched picker shutdown to after finalize() call - simulating GUI shutdown after Vamsas session shutdown.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@364
be28352e-c001-0410-b1a7-
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jprocter [Thu, 15 Mar 2007 14:54:56 +0000 (14:54 +0000)]
WatcherElement reference should be nulled by caller of removeClient rather than within method.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@363
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jprocter [Thu, 15 Mar 2007 14:50:42 +0000 (14:50 +0000)]
interrupt before wait sleep so haltWatchers is more likely to return after watchThread has stopped.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@362
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jprocter [Thu, 15 Mar 2007 14:48:20 +0000 (14:48 +0000)]
Messages are thrown away when passThru is false (rather than receiver thread sleeping). Better shutdown behaviour (thread references are nulled)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@361
be28352e-c001-0410-b1a7-
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jprocter [Thu, 15 Mar 2007 14:45:29 +0000 (14:45 +0000)]
closing channel always releases lock (on windows anyhow)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@360
be28352e-c001-0410-b1a7-
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jprocter [Thu, 15 Mar 2007 14:44:03 +0000 (14:44 +0000)]
occasional null pointer exception
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@359
be28352e-c001-0410-b1a7-
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jprocter [Thu, 15 Mar 2007 14:43:39 +0000 (14:43 +0000)]
ensured backups are only made when backup==true
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@358
be28352e-c001-0410-b1a7-
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jprocter [Thu, 15 Mar 2007 14:16:08 +0000 (14:16 +0000)]
removed infinite loop on server shutdown
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@357
be28352e-c001-0410-b1a7-
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jprocter [Thu, 8 Mar 2007 14:19:16 +0000 (14:19 +0000)]
more debug messages.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@356
be28352e-c001-0410-b1a7-
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jprocter [Thu, 8 Mar 2007 14:18:23 +0000 (14:18 +0000)]
simplified and bugfixed occasional lock contention.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@355
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jprocter [Thu, 8 Mar 2007 14:17:10 +0000 (14:17 +0000)]
bugfixes for shutdown and null message reception.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@354
be28352e-c001-0410-b1a7-
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jprocter [Thu, 8 Mar 2007 14:07:22 +0000 (14:07 +0000)]
utility functions for dealing with Range and Properties elements.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@353
be28352e-c001-0410-b1a7-
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jprocter [Thu, 8 Mar 2007 13:14:55 +0000 (13:14 +0000)]
remove unnecessary existence checks.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@352
be28352e-c001-0410-b1a7-
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jprocter [Thu, 8 Mar 2007 13:14:30 +0000 (13:14 +0000)]
remove unnecessary existence checks.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@351
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imilne [Wed, 7 Mar 2007 11:09:07 +0000 (11:09 +0000)]
Added shutdown() methods for the socket-based PickManager code.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@350
be28352e-c001-0410-b1a7-
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jprocter [Tue, 6 Mar 2007 12:57:09 +0000 (12:57 +0000)]
stub for the dom tree update event generator.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@349
be28352e-c001-0410-b1a7-
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jprocter [Tue, 6 Mar 2007 12:56:31 +0000 (12:56 +0000)]
added PickManager test code. Current state of library means this example app fails to shutdown after three instances have been started.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@348
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jprocter [Tue, 6 Mar 2007 12:55:46 +0000 (12:55 +0000)]
synchronized methods to ensure thread safety for underlying SimplePickManager code. (not successful yet!)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@347
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jprocter [Tue, 27 Feb 2007 22:19:12 +0000 (22:19 +0000)]
ensured single instance of vamsasarchive io handler to prevent lock contention.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@346
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jprocter [Mon, 12 Feb 2007 14:33:21 +0000 (14:33 +0000)]
non-1.4 factory construtors removed.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@345
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pmarguerite [Fri, 2 Feb 2007 17:45:52 +0000 (17:45 +0000)]
Added generateClientUrn method to generate a urn from client name and version. Ensures that the client urn is generated, when one of the attribute is modified. And, add support for null attribute in the equals method
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@344
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 2 Feb 2007 17:39:51 +0000 (17:39 +0000)]
Avoid creation of ClientHandle and UserHandle objects with null attributes. Otherwise, problem with null pointer exception.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@343
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:54:01 +0000 (15:54 +0000)]
log config (with SESSIONLOG config too).
Need to separate SESSIONLOG in future.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@342
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:51:15 +0000 (15:51 +0000)]
SimpleClient implementation testable against uk.ac.vamsas.test.ExampleApplication
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@341
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:47:39 +0000 (15:47 +0000)]
fixed bug leaving copies of archive backups (no testcase for this)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@340
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:46:10 +0000 (15:46 +0000)]
extended to test against SimpleClient implementation
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@339
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:42:39 +0000 (15:42 +0000)]
added TODO for testing getAppData method before migration to simpleClient.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@338
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:39:22 +0000 (15:39 +0000)]
untested watcherElement for spotting changes in SessionFlagFile presence/absence.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@337
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:38:15 +0000 (15:38 +0000)]
formal polling thread for particular FileWatcher types (VamsasFile or SessionFile style)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@336
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:35:44 +0000 (15:35 +0000)]
method to get File object being watched
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@335
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:34:27 +0000 (15:34 +0000)]
fixed subtle bug in closeChannel behaviour on lock release and debug logging.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@334
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:26:43 +0000 (15:26 +0000)]
wrapper for conditionally passing picks onto the client application
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@333
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 15:26:11 +0000 (15:26 +0000)]
added (broken) haltPickManager methods
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@332
be28352e-c001-0410-b1a7-
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jprocter [Fri, 12 Jan 2007 13:29:45 +0000 (13:29 +0000)]
refactoring org->uk.ac
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@331
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 5 Jan 2007 19:01:15 +0000 (19:01 +0000)]
VamsasSession: Fixed VamsasSession init/construction if the session directory exists and do not contains session files.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@330
be28352e-c001-0410-b1a7-
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pmarguerite [Thu, 4 Jan 2007 15:45:53 +0000 (15:45 +0000)]
when closing session, closes each associated VAMAV clients
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@329
be28352e-c001-0410-b1a7-
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jprocter [Fri, 15 Dec 2006 17:32:41 +0000 (17:32 +0000)]
more refactoring fallout
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@328
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 16:13:25 +0000 (16:13 +0000)]
Updated simple client sessionURN to use URI instead of URL to generate SessionURN (URI) from the session directory path (file location or vamsas session).
Updated SimpleClient to match modified constructor (MalformedURL not throw anymore)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@327
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:58:04 +0000 (15:58 +0000)]
SessionURN fix asFile method now create the File object from the URI
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@326
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:47:37 +0000 (15:47 +0000)]
Added TestSessionURN: to test the creation of a sessionURN and to retrieve a correct file from it.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@325
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:46:51 +0000 (15:46 +0000)]
SessionUrn: modified to scope with windows (space ... in file name. Use URI instead of URL
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@324
be28352e-c001-0410-b1a7-
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imilne [Fri, 15 Dec 2006 15:09:28 +0000 (15:09 +0000)]
Modified CustomMessage.java so that tabs are used to separate message elements rather than underscores.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@323
be28352e-c001-0410-b1a7-
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imilne [Fri, 15 Dec 2006 15:08:57 +0000 (15:08 +0000)]
Modified MouseOverMessage.java so that tabs are used to separate message elements rather than underscores.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@322
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:07:30 +0000 (15:07 +0000)]
SessionHandle: added equals method to compare SessionHandles, based on the sessionUrn
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@321
be28352e-c001-0410-b1a7-
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pmarguerite [Fri, 15 Dec 2006 15:06:25 +0000 (15:06 +0000)]
amsasSession: added addClient and removeClient to add and remove a client to/from the session client list.
Attached (as attribute) a SessionManager
Removes the currentSession of the active session list, if the client to removed is the last one of the list
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@320
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pmarguerite [Fri, 15 Dec 2006 15:03:10 +0000 (15:03 +0000)]
Moves sessionFile management to SimpleSessionManager calling SessionsFile class (dealing directly with the file)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@319
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pmarguerite [Fri, 15 Dec 2006 15:01:43 +0000 (15:01 +0000)]
SimpleClient: remove client of the session client list when closing/finalizing (finalizeClient method)
added get_session() to retrieve current vamsas session
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@318
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imilne [Fri, 15 Dec 2006 13:53:29 +0000 (13:53 +0000)]
Added comment about handling messages in the GUI event thread.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@317
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imilne [Fri, 15 Dec 2006 13:49:52 +0000 (13:49 +0000)]
Added getter methods to the MouseOverMessage class.
Added code to MouseOverMessage.java so it can reconstruct the message object from the raw data stream.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@316
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jprocter [Fri, 15 Dec 2006 12:05:06 +0000 (12:05 +0000)]
internal flags for added and updated since last read for Vobjects tested with ArchiveClient code.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@315
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imilne [Fri, 15 Dec 2006 11:52:41 +0000 (11:52 +0000)]
Checked in the document update handler interface and a concrete implementation of it (that contains empty methods).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@314
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imilne [Fri, 15 Dec 2006 11:27:30 +0000 (11:27 +0000)]
Commented out all logging messages from the pick code to speed up message transfer.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@313
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jprocter [Fri, 15 Dec 2006 11:12:32 +0000 (11:12 +0000)]
added a getter for the pickhandler interface in IClient
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@312
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jprocter [Fri, 15 Dec 2006 11:10:55 +0000 (11:10 +0000)]
added usage notes about removing specific object bindings
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@311
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jprocter [Fri, 15 Dec 2006 11:07:07 +0000 (11:07 +0000)]
extracted from the jalview.io.VamsasDatastore bindjv2obj and associated methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@310
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pmarguerite [Fri, 15 Dec 2006 09:24:24 +0000 (09:24 +0000)]
SessionUrn: added a constructor to build a SessionURN from a String
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@309
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jprocter [Fri, 15 Dec 2006 09:04:32 +0000 (09:04 +0000)]
javadoc not updated for refactored packages.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@308
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pmarguerite [Thu, 14 Dec 2006 21:18:21 +0000 (21:18 +0000)]
created setURN to generated sessionUrn from a urn as String. Allow to be replaced by an inheriting class
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@307
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pmarguerite [Thu, 14 Dec 2006 21:15:09 +0000 (21:15 +0000)]
SessionHandle: made SessionHandle serializable to be able to store it into file
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@306
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pmarguerite [Thu, 14 Dec 2006 21:14:12 +0000 (21:14 +0000)]
SessionHandle: made SessionHandle serializable to be able to store it into file
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@305
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pmarguerite [Thu, 14 Dec 2006 21:13:31 +0000 (21:13 +0000)]
VamsasSession Fix session constructor/initialisation if the session directory already exists
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@304
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pmarguerite [Thu, 14 Dec 2006 21:13:03 +0000 (21:13 +0000)]
SimpleClientFactory Added support to create a IClient for a given Session to a given session URN
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@303
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imilne [Thu, 14 Dec 2006 19:29:20 +0000 (19:29 +0000)]
Picking API now has message classes and basic implementation of interfaces (for its own implementation and client-app message handling implementation).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@302
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pmarguerite [Thu, 14 Dec 2006 19:21:21 +0000 (19:21 +0000)]
Fix session constructor/initialisation if the session directory already exists
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@301
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jprocter [Thu, 14 Dec 2006 19:07:00 +0000 (19:07 +0000)]
changed vamsasDocument and vamsas types namespaces.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@300
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jprocter [Thu, 14 Dec 2006 18:58:50 +0000 (18:58 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@299
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jprocter [Thu, 14 Dec 2006 18:58:27 +0000 (18:58 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@298
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jprocter [Thu, 14 Dec 2006 18:57:20 +0000 (18:57 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@297
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git://source.jalview.org / vamsas.git / log