jprocter [Wed, 22 Aug 2007 16:14:29 +0000 (16:14 +0000)]
attempts to remove any locks after client is finalized
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@443
be28352e-c001-0410-b1a7-
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jprocter [Wed, 22 Aug 2007 12:50:47 +0000 (12:50 +0000)]
fixed regex and made 'improper' support for parsing NHX style trees TODO: FIX THIS
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@442
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jprocter [Wed, 22 Aug 2007 09:30:19 +0000 (09:30 +0000)]
better 'main' test and support creation of treenodes for all or just 'associated' binarynodes.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@441
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jprocter [Tue, 21 Aug 2007 16:03:27 +0000 (16:03 +0000)]
beginning of 'simple' interface for newick string based tree representation
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@440
be28352e-c001-0410-b1a7-
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jprocter [Tue, 21 Aug 2007 16:02:54 +0000 (16:02 +0000)]
refactored and new methods for making and processing treenode vector for parsed newick string
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@439
be28352e-c001-0410-b1a7-
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jprocter [Tue, 21 Aug 2007 16:01:45 +0000 (16:01 +0000)]
refactored from newickfile
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@438
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jprocter [Tue, 21 Aug 2007 12:43:54 +0000 (12:43 +0000)]
newickfile class moved into its own package ready for refactoring public methods into Trees class.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@437
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jprocter [Tue, 21 Aug 2007 12:42:22 +0000 (12:42 +0000)]
new marshaller instance ensures we use marshalling properties and correct validation methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@436
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jprocter [Fri, 17 Aug 2007 14:45:35 +0000 (14:45 +0000)]
formatting changes
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@435
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jprocter [Fri, 17 Aug 2007 14:41:01 +0000 (14:41 +0000)]
safety checks and informational Errors generated when IClientDocument is not stored at end of handling an update. Attempts to properly close all session file handles on finalization (Clients.obj.lck still locked and VamDoc.jar still locked after finalize though).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@434
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jprocter [Fri, 17 Aug 2007 14:38:52 +0000 (14:38 +0000)]
TODO comments
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@433
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jprocter [Fri, 17 Aug 2007 13:52:40 +0000 (13:52 +0000)]
new method to test if a particular file is or is related to the target of a lock
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@432
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jprocter [Fri, 17 Aug 2007 13:22:08 +0000 (13:22 +0000)]
portability issue error messages
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@431
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jprocter [Fri, 17 Aug 2007 09:48:43 +0000 (09:48 +0000)]
fixed update of existing appdata jar entry bug (raised a Duplicate zipEnty exception)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@430
be28352e-c001-0410-b1a7-
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jprocter [Thu, 16 Aug 2007 17:21:32 +0000 (17:21 +0000)]
refactored IClientAppdata and implementation has been minimally tested and bugfixed - still outstanding issues are when an app updates an Appdata already written to session (throws a DuplicateZipEntryException).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@429
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jprocter [Thu, 16 Aug 2007 17:20:15 +0000 (17:20 +0000)]
refactored AppData stream classes so they are returned from the IClientAppdata interface. This is not a great solution but at least makes the classes more usable for data IO.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@428
be28352e-c001-0410-b1a7-
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jprocter [Mon, 30 Jul 2007 14:19:50 +0000 (14:19 +0000)]
updated classpath for eclipse project
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@427
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jprocter [Mon, 30 Jul 2007 14:17:24 +0000 (14:17 +0000)]
null pointer exception on attempt to release lock explicitly.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@426
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jprocter [Sun, 15 Jul 2007 13:35:42 +0000 (13:35 +0000)]
vorbaId generator constructs valid ID strings (NCNames)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@425
be28352e-c001-0410-b1a7-
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jprocter [Fri, 29 Jun 2007 12:23:12 +0000 (12:23 +0000)]
0 to unbounded Dataset/Sequence/DbRef/Map elements. Allows alternate mappings between a sequence and its DbRef.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@424
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jprocter [Thu, 28 Jun 2007 20:17:38 +0000 (20:17 +0000)]
logic for debug message (if either or both mapped element has no defaults specified)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@423
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jprocter [Thu, 28 Jun 2007 20:16:43 +0000 (20:16 +0000)]
debug message for default mapping
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@422
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jprocter [Thu, 28 Jun 2007 20:12:32 +0000 (20:12 +0000)]
added mapType utilities.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@421
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jprocter [Thu, 28 Jun 2007 19:56:17 +0000 (19:56 +0000)]
imported utility classes for working with MapTypes from Jalview (v 2.3+ code)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@420
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jprocter [Thu, 28 Jun 2007 14:43:25 +0000 (14:43 +0000)]
quieter logging
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@419
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jprocter [Thu, 28 Jun 2007 14:42:33 +0000 (14:42 +0000)]
build on 28th June
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@418
be28352e-c001-0410-b1a7-
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jprocter [Thu, 28 Jun 2007 14:41:19 +0000 (14:41 +0000)]
updated castor to castor-1.1-cycle
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@417
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jprocter [Thu, 28 Jun 2007 14:40:49 +0000 (14:40 +0000)]
prototype of Newick string parsing code and node binding utilities. Will be updated shortly with debugged routines from Jalview
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@416
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jprocter [Thu, 28 Jun 2007 14:38:55 +0000 (14:38 +0000)]
raise the DOCUMENT_REQUESTTOCLOSE event and debug output.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@415
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jprocter [Thu, 28 Jun 2007 14:38:02 +0000 (14:38 +0000)]
use the simpleClient's lockFactory for the client's lockfile to avoid platform dependent lock creation issues.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@414
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jprocter [Thu, 28 Jun 2007 14:37:02 +0000 (14:37 +0000)]
debugging on the haltWatch method
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@413
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jprocter [Thu, 28 Jun 2007 14:16:55 +0000 (14:16 +0000)]
use of config class
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@412
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jprocter [Thu, 28 Jun 2007 14:16:28 +0000 (14:16 +0000)]
beginnings of configuration settings class. Introduced to avoid validation overhead in castor-1.1-cycle-xml.jar
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@411
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jprocter [Thu, 28 Jun 2007 14:14:42 +0000 (14:14 +0000)]
modified warning for unresolved IDRef during castor un/marshalling. This message is unlikely to be observed if the cycle-patched castor is used
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@410
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jprocter [Thu, 28 Jun 2007 14:13:27 +0000 (14:13 +0000)]
added check for 'broken update' - where vamsas document file has been incorrectly written.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@409
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jprocter [Thu, 28 Jun 2007 14:12:30 +0000 (14:12 +0000)]
end position not correctly set.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@408
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jprocter [Thu, 28 Jun 2007 13:51:44 +0000 (13:51 +0000)]
sequence mappings and DbRef mapping objects unified and source binding for castor-1.1-cycle-xml.jar dependency
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@407
be28352e-c001-0410-b1a7-
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jprocter [Thu, 28 Jun 2007 13:49:04 +0000 (13:49 +0000)]
cyclic IDREF patched castor-1.1.1 source
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@406
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jprocter [Thu, 28 Jun 2007 13:11:26 +0000 (13:11 +0000)]
less verbose default logging
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@405
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jprocter [Tue, 12 Jun 2007 14:42:02 +0000 (14:42 +0000)]
fixed regex to remove all kinds of file separators ('\' must be escaped correctly)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@404
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pmarguerite [Tue, 12 Jun 2007 10:40:53 +0000 (10:40 +0000)]
Added to mechanism to determine if a client closing is the last one of the session.
Each application creates a file with a lock on it in a subdirectory of the session.
When a client is closing, it checks if there is no other locked file.
If no file, it is the last one and closes the sessions.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@403
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jprocter [Tue, 22 May 2007 15:16:26 +0000 (15:16 +0000)]
schema changes: provenance-entry-date is now an xmlSchema:dateTime bound directly to java.util.Date. Sequence and alignment sequence associated annotation takes an array of object references. Trees have a nodeMapping object to map between entities in the tree representation and objects in the document. Dataset sequences have Vxrefs which are named references to one or more other document objects.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@402
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jprocter [Mon, 21 May 2007 12:37:50 +0000 (12:37 +0000)]
log validation errors which cause the 'mergeRoots' call to fail.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@401
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pmarguerite [Mon, 21 May 2007 09:56:26 +0000 (09:56 +0000)]
VamsasSession: increased time before considering the current client is the last one of the session (no modification on the client list).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@400
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jprocter [Mon, 21 May 2007 07:28:00 +0000 (07:28 +0000)]
test cdoc object retrieve by VorbaId and add timeout for hanging around (needs to be a specific command)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@399
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jprocter [Mon, 21 May 2007 07:26:23 +0000 (07:26 +0000)]
todo doc
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@398
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jprocter [Mon, 21 May 2007 07:25:59 +0000 (07:25 +0000)]
fix non-retrieval of vobject by vorba id on clientdoc interface
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@397
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pmarguerite [Fri, 18 May 2007 15:14:51 +0000 (15:14 +0000)]
VamsasSession: fixed incorrectly stopping the EventGeneratorThread
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@396
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pmarguerite [Fri, 18 May 2007 14:48:31 +0000 (14:48 +0000)]
VamsasSession: insure the RemoveClientWatchCallBack handleWatchEvent method. no needed to check if there is no client in the client list,if the list does not have been modified
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@395
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pmarguerite [Fri, 18 May 2007 14:34:04 +0000 (14:34 +0000)]
Added support for crashed client.
Crashed client are removed correctly from the session client.
When a new client joins a session, it adds itself to the session client list and ensures that it is still in the list while it is active.
When a client wants to remove itself from the session, the client clears the session client list to check if it is the last client. (all actives clients should readd themself to the list during two watcher cycles, if the list is still empty. The client consideres itself as the last client of the session and closes properly the session)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@394
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jprocter [Fri, 18 May 2007 11:41:01 +0000 (11:41 +0000)]
better command line processing options (load, save) and slower update poll check.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@393
be28352e-c001-0410-b1a7-
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jprocter [Fri, 18 May 2007 11:20:43 +0000 (11:20 +0000)]
javadoc todo
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@392
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jprocter [Fri, 18 May 2007 11:19:24 +0000 (11:19 +0000)]
removed old Mapping object dependency
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@391
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pmarguerite [Fri, 18 May 2007 09:56:42 +0000 (09:56 +0000)]
build.xml: modified javadoc ant task to add ref to the lib directory
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@390
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amwaterhouse [Fri, 18 May 2007 09:26:55 +0000 (09:26 +0000)]
sequenceMapping added
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@389
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:38:17 +0000 (16:38 +0000)]
castor-1.1 source generation
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@388
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:37:54 +0000 (16:37 +0000)]
Descriptors live in uk.ac.vamsas.objects.core.descriptors in castor-1.1 xml binding.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@387
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jprocter [Tue, 24 Apr 2007 16:33:25 +0000 (16:33 +0000)]
relatively silent debug state (have to sort out of this log4j or the one in resources is being used)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@386
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jprocter [Tue, 24 Apr 2007 16:32:03 +0000 (16:32 +0000)]
pick manager and simulation of alignment modification within existing document.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@385
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jprocter [Tue, 24 Apr 2007 16:15:30 +0000 (16:15 +0000)]
part-implemented and *untested*
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@384
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jprocter [Tue, 24 Apr 2007 16:13:49 +0000 (16:13 +0000)]
introduced hashCode based object change detection that works (see vamsas.test.exampleApplication)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@383
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jprocter [Tue, 24 Apr 2007 16:12:47 +0000 (16:12 +0000)]
attempt to fix occasional backupSessionFile exception.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@382
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:08:59 +0000 (16:08 +0000)]
ambiguous import of 'Lock' removed.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@381
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jprocter [Tue, 24 Apr 2007 16:07:59 +0000 (16:07 +0000)]
incorrect update approach (attempt prior to hashCode fix in castor-1.1(v))
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@380
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:05:51 +0000 (16:05 +0000)]
int to long type change in castor-1.1(v) objects
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@379
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jprocter [Tue, 24 Apr 2007 16:04:22 +0000 (16:04 +0000)]
rebult for castor-1.1(vamsas version)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@378
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 16:02:26 +0000 (16:02 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@377
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jprocter [Tue, 24 Apr 2007 15:58:37 +0000 (15:58 +0000)]
fixed session log configuration
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@376
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 15:55:36 +0000 (15:55 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@375
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jprocter [Tue, 24 Apr 2007 15:55:11 +0000 (15:55 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@374
be28352e-c001-0410-b1a7-
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jprocter [Tue, 24 Apr 2007 15:54:37 +0000 (15:54 +0000)]
updated to castor-1.1 + Vamsas Specific hashCode modification
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@373
be28352e-c001-0410-b1a7-
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jprocter [Tue, 20 Mar 2007 14:27:01 +0000 (14:27 +0000)]
update detection mechanism based comparing the difference between the position of start and end tags of a Vobject between successive document unmarshallings.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@372
be28352e-c001-0410-b1a7-
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jprocter [Tue, 20 Mar 2007 14:27:00 +0000 (14:27 +0000)]
update detection mechanism based comparing the difference between the position of start and end tags of a Vobject between successive document unmarshallings.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@371
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jprocter [Tue, 20 Mar 2007 14:19:41 +0000 (14:19 +0000)]
pass maintained hash of Vobject hash values to IdFactory so it can detect modified objects.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@370
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jprocter [Tue, 20 Mar 2007 14:17:55 +0000 (14:17 +0000)]
commented out methods that might be used for accessing a list of updated objects stored in the vamsas session
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@369
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jprocter [Tue, 20 Mar 2007 14:16:49 +0000 (14:16 +0000)]
javadoc
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@368
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jprocter [Tue, 20 Mar 2007 14:16:33 +0000 (14:16 +0000)]
new constructor to pass hash of Vobject hash values to unmarshalling mechanism for comparison with document objects.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@367
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jprocter [Mon, 19 Mar 2007 13:26:04 +0000 (13:26 +0000)]
trap exceptions during session events and ensure pick messages are blocked whilst document changed events occur
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@366
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jprocter [Mon, 19 Mar 2007 13:24:26 +0000 (13:24 +0000)]
debug log output
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@365
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jprocter [Thu, 15 Mar 2007 15:25:25 +0000 (15:25 +0000)]
switched picker shutdown to after finalize() call - simulating GUI shutdown after Vamsas session shutdown.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@364
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jprocter [Thu, 15 Mar 2007 14:54:56 +0000 (14:54 +0000)]
WatcherElement reference should be nulled by caller of removeClient rather than within method.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@363
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jprocter [Thu, 15 Mar 2007 14:50:42 +0000 (14:50 +0000)]
interrupt before wait sleep so haltWatchers is more likely to return after watchThread has stopped.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@362
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jprocter [Thu, 15 Mar 2007 14:48:20 +0000 (14:48 +0000)]
Messages are thrown away when passThru is false (rather than receiver thread sleeping). Better shutdown behaviour (thread references are nulled)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@361
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jprocter [Thu, 15 Mar 2007 14:45:29 +0000 (14:45 +0000)]
closing channel always releases lock (on windows anyhow)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@360
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jprocter [Thu, 15 Mar 2007 14:44:03 +0000 (14:44 +0000)]
occasional null pointer exception
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@359
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jprocter [Thu, 15 Mar 2007 14:43:39 +0000 (14:43 +0000)]
ensured backups are only made when backup==true
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@358
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jprocter [Thu, 15 Mar 2007 14:16:08 +0000 (14:16 +0000)]
removed infinite loop on server shutdown
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@357
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jprocter [Thu, 8 Mar 2007 14:19:16 +0000 (14:19 +0000)]
more debug messages.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@356
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jprocter [Thu, 8 Mar 2007 14:18:23 +0000 (14:18 +0000)]
simplified and bugfixed occasional lock contention.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@355
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jprocter [Thu, 8 Mar 2007 14:17:10 +0000 (14:17 +0000)]
bugfixes for shutdown and null message reception.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@354
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jprocter [Thu, 8 Mar 2007 14:07:22 +0000 (14:07 +0000)]
utility functions for dealing with Range and Properties elements.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@353
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jprocter [Thu, 8 Mar 2007 13:14:55 +0000 (13:14 +0000)]
remove unnecessary existence checks.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@352
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jprocter [Thu, 8 Mar 2007 13:14:30 +0000 (13:14 +0000)]
remove unnecessary existence checks.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@351
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imilne [Wed, 7 Mar 2007 11:09:07 +0000 (11:09 +0000)]
Added shutdown() methods for the socket-based PickManager code.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@350
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jprocter [Tue, 6 Mar 2007 12:57:09 +0000 (12:57 +0000)]
stub for the dom tree update event generator.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@349
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jprocter [Tue, 6 Mar 2007 12:56:31 +0000 (12:56 +0000)]
added PickManager test code. Current state of library means this example app fails to shutdown after three instances have been started.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@348
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jprocter [Tue, 6 Mar 2007 12:55:46 +0000 (12:55 +0000)]
synchronized methods to ensure thread safety for underlying SimplePickManager code. (not successful yet!)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@347
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jprocter [Tue, 27 Feb 2007 22:19:12 +0000 (22:19 +0000)]
ensured single instance of vamsasarchive io handler to prevent lock contention.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@346
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jprocter [Mon, 12 Feb 2007 14:33:21 +0000 (14:33 +0000)]
non-1.4 factory construtors removed.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@345
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pmarguerite [Fri, 2 Feb 2007 17:45:52 +0000 (17:45 +0000)]
Added generateClientUrn method to generate a urn from client name and version. Ensures that the client urn is generated, when one of the attribute is modified. And, add support for null attribute in the equals method
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@344
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git://source.jalview.org / vamsas.git / log