From 36de360de19fa715542db1cebe98ab65b83db540 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Thu, 21 Jan 2016 15:31:11 +0000 Subject: [PATCH] JAL-1705 ENSEMBL added, unused constants removed --- src/jalview/datamodel/DBRefSource.java | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java index 99c68ba..8783e4f 100755 --- a/src/jalview/datamodel/DBRefSource.java +++ b/src/jalview/datamodel/DBRefSource.java @@ -79,19 +79,18 @@ public class DBRefSource public static final String GENEDB = "GeneDB".toUpperCase(); /** + * Ensembl + */ + public static final String ENSEMBL = "ENSEMBL"; + + /** * List of databases whose sequences might have coding regions annotated */ - public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB }; + public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB, + ENSEMBL }; - public static final String[] CODINGDBS = { EMBLCDS, GENEDB }; + public static final String[] CODINGDBS = { EMBLCDS, GENEDB, ENSEMBL }; public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB, - EMBLCDSProduct }; - - public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB, - EMBLCDSProduct }; - - public static final String[] PROTEINSTR = { PDB }; - - public static final String[] DOMAINDBS = { PFAM, RFAM }; + EMBLCDSProduct, ENSEMBL }; // Ensembl ENSP* entries are protein } -- 1.7.10.2