From 28b7316981ef2facee7fd064b3d429c7b5b583d7 Mon Sep 17 00:00:00 2001
From: hansonr <hansonr@STO24954W.ad.stolaf.edu>
Date: Thu, 18 Jul 2019 07:22:15 +0100
Subject: [PATCH] JAL-3370 sep ignored in getAlignmentOrderFrom(AlignFrameI
 alf, String sep)

---
 src/jalview/bin/JalviewAppLoader.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/bin/JalviewAppLoader.java b/src/jalview/bin/JalviewAppLoader.java
index 0d911c0..921ccdf 100644
--- a/src/jalview/bin/JalviewAppLoader.java
+++ b/src/jalview/bin/JalviewAppLoader.java
@@ -1228,7 +1228,7 @@ public class JalviewAppLoader
     {
       order[i] = alorder.getSequenceAt(i).getName();
     }
-    return arrayToSeparatorList(order);
+    return arrayToSeparatorList(order, sep);
   }
 
   public String getSelectedSequencesAsAlignmentFrom(AlignFrameI alf,
-- 
1.7.10.2