From 3896a79ee3a374979a32d68edd1dac8def7e15b7 Mon Sep 17 00:00:00 2001 From: jprocter Date: Tue, 18 Jul 2006 14:12:45 +0000 Subject: [PATCH] use of GapChars --- src/jalview/datamodel/Sequence.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java index 0e52ea7..615f670 100755 --- a/src/jalview/datamodel/Sequence.java +++ b/src/jalview/datamodel/Sequence.java @@ -445,7 +445,7 @@ public class Sequence implements SequenceI public int[] gapMap() { // Returns an int array giving the position of each residue in the sequence in the alignment - String seq = jalview.analysis.AlignSeq.extractGaps("-. ", sequence); + String seq = jalview.analysis.AlignSeq.extractGaps(jalview.util.Comparison.GapChars, sequence); int[] map = new int[seq.length()]; int j = 0; int p = 0; -- 1.7.10.2